Miyakogusa Predicted Gene

Lj0g3v0048599.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0048599.1 tr|F4XRB8|F4XRB8_9CYAN 50S ribosomal protein L28
OS=Moorea producens 3L GN=rpl28 PE=3 SV=1,63.01,3e-19,no
description,NULL; seg,NULL; L28: ribosomal protein L28,Ribosomal
protein L28; Ribosomal_L28,Ribos,CUFF.2259.1
         (147 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g00520.2                                                       169   7e-43
Glyma10g00520.1                                                       169   7e-43
Glyma02g00500.1                                                        60   9e-10

>Glyma10g00520.2 
          Length = 136

 Score =  169 bits (429), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 90/146 (61%), Positives = 99/146 (67%), Gaps = 15/146 (10%)

Query: 2   AGCAVSLANSFTFASRAVAVAVAPTKSSFSSTQLGFVTSQLSGLSLCCQPQPTLKLPXXX 61
           A CAVS  NSF  +                 + LGF++S+L+GL +C    P   L    
Sbjct: 6   ASCAVSFRNSFGVSK---------------PSDLGFLSSRLNGLRICFPKLPPTPLTASP 50

Query: 62  XXXXXXXXXXXXCPFTGKKANRANKVSFSNHKTKKLQFVNLQYKRIWWEAGKRYVKLRLS 121
                       CPFTGKK+NRANKVSFSNHKTKKLQFVNLQYKRIWWEAGKRYVKLRLS
Sbjct: 51  FPTPLPIVAKRVCPFTGKKSNRANKVSFSNHKTKKLQFVNLQYKRIWWEAGKRYVKLRLS 110

Query: 122 TKALKTIEKNGLDAVAKKAGVDLRKK 147
           TKALKTIEKNGLDAVAKKAG+DLRKK
Sbjct: 111 TKALKTIEKNGLDAVAKKAGIDLRKK 136


>Glyma10g00520.1 
          Length = 136

 Score =  169 bits (429), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 90/146 (61%), Positives = 99/146 (67%), Gaps = 15/146 (10%)

Query: 2   AGCAVSLANSFTFASRAVAVAVAPTKSSFSSTQLGFVTSQLSGLSLCCQPQPTLKLPXXX 61
           A CAVS  NSF  +                 + LGF++S+L+GL +C    P   L    
Sbjct: 6   ASCAVSFRNSFGVSK---------------PSDLGFLSSRLNGLRICFPKLPPTPLTASP 50

Query: 62  XXXXXXXXXXXXCPFTGKKANRANKVSFSNHKTKKLQFVNLQYKRIWWEAGKRYVKLRLS 121
                       CPFTGKK+NRANKVSFSNHKTKKLQFVNLQYKRIWWEAGKRYVKLRLS
Sbjct: 51  FPTPLPIVAKRVCPFTGKKSNRANKVSFSNHKTKKLQFVNLQYKRIWWEAGKRYVKLRLS 110

Query: 122 TKALKTIEKNGLDAVAKKAGVDLRKK 147
           TKALKTIEKNGLDAVAKKAG+DLRKK
Sbjct: 111 TKALKTIEKNGLDAVAKKAGIDLRKK 136


>Glyma02g00500.1 
          Length = 50

 Score = 60.1 bits (144), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 30/31 (96%), Positives = 31/31 (100%)

Query: 117 KLRLSTKALKTIEKNGLDAVAKKAGVDLRKK 147
           KLRLSTKALKTIEKNGLDAVAKKAG+DLRKK
Sbjct: 20  KLRLSTKALKTIEKNGLDAVAKKAGIDLRKK 50