Miyakogusa Predicted Gene

Lj0g3v0041269.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0041269.1 tr|G7J986|G7J986_MEDTR Chromo domain-containing
protein LHP1 OS=Medicago truncatula GN=MTR_3g118260
,67.27,2e-16,Chromo domain-like,Chromo domain-like; seg,NULL;
Chromatin organization modifier domain,Chromo domai,CUFF.1925.1
         (429 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma16g08860.1                                                       369   e-102
Glyma03g23260.1                                                       317   2e-86
Glyma04g00340.1                                                       140   3e-33
Glyma06g00400.1                                                       130   4e-30

>Glyma16g08860.1 
          Length = 436

 Score =  369 bits (946), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 193/344 (56%), Positives = 236/344 (68%), Gaps = 24/344 (6%)

Query: 88  FYEVEAIRRKRIRRGQPQYLIKWRDWSEGSNTWEPLENLASVPDVVAAFEASLRSAX-XX 146
           F+EVEAIRRKR+R+G+ QYLIKW  W E +NTWEPLENL SVPDVV AFE SL+S     
Sbjct: 110 FFEVEAIRRKRLRKGEVQYLIKWNGWPETANTWEPLENLESVPDVVEAFEESLKSGKHRK 169

Query: 147 XXXXHAVHHIQPKKRLERSATPYSLRQFPANTPDNHHTQSAPLNDISIPDIPAFPQTVLF 206
               H VHH QPKKRLERS TPYSLR+F  +T +NH   + PLND S+PDIPAFP TVL 
Sbjct: 170 RKRKHVVHHTQPKKRLERSTTPYSLRRFSTSTAENHTQSAPPLNDPSLPDIPAFPHTVL- 228

Query: 207 ADEVENNGDASSLGNSNHAHGNRSADAPEAVVERNEENDYDPKLSELRATTTNGYEGENL 266
                      SL  +  ++ NRSA+  E  ++RNEENDYDP LSEL+A T+NG + + L
Sbjct: 229 -----------SLRKATPSNANRSANGSEQNIKRNEENDYDPVLSELKAMTSNGNDADRL 277

Query: 267 ATQFQETQHSVGTRHVDGQLN----GDCTEPGQSGRCRGAKRRKSGSVKRFNRDSYAGDE 322
           A +  E + S G    +GQ++    G C E  +S RCRG+KRRK GSVKRF ++ YA +E
Sbjct: 278 AIRIPEAKGS-GPSGSNGQMDAKSKGACMETSESDRCRGSKRRKCGSVKRFKKELYA-NE 335

Query: 323 PVNTQRPVDVSAVTTEQVQTGAADNAGPNGHKRTNHARPACTIVKIIKPVRYSAAVASSM 382
           P N + PV +   T E  +T  A + G      TNHARPA  IV I+KPV YSA+VAS M
Sbjct: 336 PANAENPVSMPVGTAEPERTRDAGSGG-----NTNHARPASNIVNIVKPVGYSASVASGM 390

Query: 383 QDASVTFVALRSDGTEVLVDNTYLKAYYPILLINYYEQHLRYTP 426
           QD  VTFVA +SDGTEV+VDN YLKA+ P+LLIN+YEQHLRY+P
Sbjct: 391 QDVLVTFVASKSDGTEVMVDNKYLKAFNPLLLINFYEQHLRYSP 434


>Glyma03g23260.1 
          Length = 455

 Score =  317 bits (811), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 183/383 (47%), Positives = 224/383 (58%), Gaps = 54/383 (14%)

Query: 78  RERVPFSVKGFYEVEAIRRKRIRRGQPQYL-------IKWR------------------- 111
           R+  P   + F+EV+AIRRKR+R+     L       I WR                   
Sbjct: 91  RQGFPVLGENFFEVQAIRRKRVRKLTSHRLCCVAVLRILWRLRVMFFPCFVLGCVCVYVC 150

Query: 112 ----DWSEGSNTWEPLENLASVPDVVAAFEASLRSAX-XXXXXXHAVHHIQPKKRLERSA 166
                W E +NTWEP ENL SVPDVV AFE SL+S         H VHH QPKKRLERS 
Sbjct: 151 VCVNGWPETANTWEPPENLESVPDVVEAFEESLKSGKHRKRKRKHVVHHTQPKKRLERST 210

Query: 167 TPYSLRQFPANTPDNHHTQSAPLNDISIPDIPAFPQTVLFADEVENNGDASSLGNSNHAH 226
           TPYSLR+F   T +NH   + PL D S+P+IPAFP+              SSL  +  ++
Sbjct: 211 TPYSLRRFSTGTAENHTQSAPPLIDPSLPNIPAFPR--------------SSLRKATPSN 256

Query: 227 GNRSADAPEAVVERNEENDYDPKLSELRATTTNGYEGENLATQFQETQHSV---GTRHVD 283
            NRSA+  E  ++R EENDYDP LSEL+  T NG + + LA +  E + S        +D
Sbjct: 257 ANRSANGSEPNIKRTEENDYDPVLSELKTMTANGNDTDRLAIRIPEAKGSGPSGSNDQMD 316

Query: 284 GQLNGDCTEPGQSGRCRGAKRRKSGSVKRFNRDSYAGDEPVNTQRPVDVSAVTTEQVQTG 343
            +  G   E   SGRCRG+KRRK GSVKRF ++ YA +EP NT+ PV +   T E  QT 
Sbjct: 317 AKSKGVSMETNASGRCRGSKRRKCGSVKRFKKELYA-NEPANTENPVGLPVSTAEPEQTR 375

Query: 344 AADNAGPNGHKRTNHARPACTIVKIIKPVRYSAAVASSMQDASVTFVALRSDGTEVLVDN 403
            A + G      TNHARPA  IV IIKPV YSA+VAS  QD  VTFVA +SDGTEV+VDN
Sbjct: 376 DAGSGG-----NTNHARPASNIVNIIKPVGYSASVASGTQDVLVTFVASKSDGTEVMVDN 430

Query: 404 TYLKAYYPILLINYYEQHLRYTP 426
            YLK + P+LLIN+YEQHLRY+P
Sbjct: 431 KYLKTFNPLLLINFYEQHLRYSP 453


>Glyma04g00340.1 
          Length = 296

 Score =  140 bits (352), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 84/185 (45%), Positives = 105/185 (56%), Gaps = 51/185 (27%)

Query: 244 NDYDPKLSELRATTTNGYEGENLATQFQETQHSVGTRHVDGQLNGDCTEPGQSGRCRGAK 303
           NDYDPKLSEL+A T  G + +NLA  FQ+   S                       RGAK
Sbjct: 159 NDYDPKLSELKAPTHTGVQLDNLAIHFQQPIPS-----------------------RGAK 195

Query: 304 RRKSGS-VKRFNRDS-YAGDEPVNTQRPVDVSAVTTEQVQTGAADNAGPNGHKRTNHARP 361
           RRKS S VKRF RD+  A  +P++   P+++    T                        
Sbjct: 196 RRKSASSVKRFKRDTDAAALQPISA--PINMPDANT------------------------ 229

Query: 362 ACTIVKIIKPVRYSAAVASSMQDASVTFVALRSDGTEVLVDNTYLKAYYPILLINYYEQH 421
           AC IVKIIKP+ YSA+++ +M D  VTF+A+RSDGTEV+VDN YLKAY P+LLIN+YE H
Sbjct: 230 ACNIVKIIKPIGYSASLSDNMHDVLVTFMAMRSDGTEVMVDNRYLKAYNPLLLINFYEMH 289

Query: 422 LRYTP 426
           LRYTP
Sbjct: 290 LRYTP 294



 Score =  121 bits (304), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 62/112 (55%), Positives = 73/112 (65%), Gaps = 3/112 (2%)

Query: 87  GFYEVEAIRRKRIRRGQPQYLIKWRDWSEGSNTWEPLENLASVPDVVAAFEASLRSAXXX 146
           GFYE+E IRRKR+R+GQ QYLIKWR W E +NTWEPLENL SVPD+V AFE SL+S    
Sbjct: 60  GFYEIETIRRKRLRKGQLQYLIKWRGWPETANTWEPLENLQSVPDLVDAFEDSLKSGKHQ 119

Query: 147 XXXXHAVHHIQ---PKKRLERSATPYSLRQFPANTPDNHHTQSAPLNDISIP 195
                 V  +Q    KKR ERS T YSLR FP  TP N +     L+++  P
Sbjct: 120 KRKRKHVDVLQLTLLKKRSERSTTSYSLRHFPPLTPTNANDYDPKLSELKAP 171


>Glyma06g00400.1 
          Length = 333

 Score =  130 bits (326), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 83/185 (44%), Positives = 100/185 (54%), Gaps = 49/185 (26%)

Query: 244 NDYDPKLSELRATTTN-GYEGENLATQFQETQHSVGTRHVDGQLNGDCTEPGQSGRCRGA 302
           NDYDPKLSEL+   TN G + +NLA  FQ   H + +R                    GA
Sbjct: 194 NDYDPKLSELKEAPTNTGVQLDNLAIHFQ---HPIPSR--------------------GA 230

Query: 303 KRRKSGS-VKRFNRDSYAGDEPVNTQRPVDVSAVTTEQVQTGAADNAGPNGHKRTNHARP 361
           KRRKS S VKRF RD              D +A+          D               
Sbjct: 231 KRRKSASSVKRFKRDP-------------DAAAIQPIAAPIHMPDATNT----------- 266

Query: 362 ACTIVKIIKPVRYSAAVASSMQDASVTFVALRSDGTEVLVDNTYLKAYYPILLINYYEQH 421
           AC IVKIIKP+ YSA+++ +M D  VTF+A+RSDGTEV+VDN YLKAY P+LLIN+YE H
Sbjct: 267 ACNIVKIIKPIGYSASLSDNMHDVLVTFMAMRSDGTEVMVDNRYLKAYNPLLLINFYEMH 326

Query: 422 LRYTP 426
           LRYTP
Sbjct: 327 LRYTP 331



 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 57/97 (58%), Positives = 64/97 (65%), Gaps = 4/97 (4%)

Query: 87  GFYEVEAIRRKRIRRGQPQYLIKWRDWSEGSNTWEPLENLASVPDVVAAFEASLRSAXX- 145
           GFYE+E IRRKR+R+GQ QYLIKWR W E +NTWEPL NL SVPD++ AFE SL  +   
Sbjct: 94  GFYEIETIRRKRLRKGQLQYLIKWRGWPETANTWEPLGNLQSVPDLIDAFEESLLKSGKH 153

Query: 146 -XXXXXHA--VHHIQPKKRLERSATPYSLRQFPANTP 179
                 HA  V   Q KKR ERS T YSLR FP   P
Sbjct: 154 HKRKRKHADVVQLTQLKKRSERSTTSYSLRHFPPQVP 190