Miyakogusa Predicted Gene

Lj0g3v0038519.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0038519.1 tr|F6HGF2|F6HGF2_VITVI DNA-directed RNA
polymerase OS=Vitis vinifera GN=VIT_01s0010g00690 PE=3
SV=1,89.81,0,DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL,DNA-directed
RNA polymerase, phage-type; no
description,N,NODE_37037_length_3713_cov_14.511716.path3.1
         (108 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g32320.6                                                       214   2e-56
Glyma16g13120.1                                                       212   6e-56
Glyma08g28120.1                                                       187   1e-48
Glyma17g07940.1                                                       179   5e-46
Glyma04g24350.1                                                       179   8e-46
Glyma18g51160.1                                                       173   3e-44
Glyma06g24890.1                                                       166   6e-42

>Glyma08g32320.6 
          Length = 276

 Score =  214 bits (544), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 97/108 (89%), Positives = 102/108 (94%)

Query: 1   MTKRQRTAFAPNFVHSLDGSHMMMTAVACKKAGLNFAGVHDSYWTHACDVDEMNRVLREK 60
           M KRQRTAF PNFVHSLDGSHMMMT VACKKAGLNFAGVHDSYWTHACDVDEMNR+LREK
Sbjct: 169 MVKRQRTAFPPNFVHSLDGSHMMMTTVACKKAGLNFAGVHDSYWTHACDVDEMNRILREK 228

Query: 61  FVELYEAPVLENLLENFQKTFPTLNFPALPERGDFDLREVLESPYFFN 108
           FVELY+AP+LENLLE+FQKTFP LNFP LPERGDFDL+EVLES YFFN
Sbjct: 229 FVELYDAPILENLLESFQKTFPALNFPPLPERGDFDLQEVLESTYFFN 276


>Glyma16g13120.1 
          Length = 224

 Score =  212 bits (540), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 97/108 (89%), Positives = 102/108 (94%)

Query: 1   MTKRQRTAFAPNFVHSLDGSHMMMTAVACKKAGLNFAGVHDSYWTHACDVDEMNRVLREK 60
           M KRQRTAF PNFVHSLDGSHMMMTAVACKKAGLNFAGVHDSYWTHACDVDEMNR+LREK
Sbjct: 117 MVKRQRTAFPPNFVHSLDGSHMMMTAVACKKAGLNFAGVHDSYWTHACDVDEMNRILREK 176

Query: 61  FVELYEAPVLENLLENFQKTFPTLNFPALPERGDFDLREVLESPYFFN 108
           FVELY+AP+LENLLE+FQKTFP LNFP LPERGDFDL+EVL S YFFN
Sbjct: 177 FVELYDAPILENLLESFQKTFPALNFPPLPERGDFDLQEVLGSAYFFN 224


>Glyma08g28120.1 
          Length = 386

 Score =  187 bits (476), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 95/108 (87%), Positives = 102/108 (94%)

Query: 1   MTKRQRTAFAPNFVHSLDGSHMMMTAVACKKAGLNFAGVHDSYWTHACDVDEMNRVLREK 60
           M  RQRTAF PNFVHSLDGSHMMMTAVACKK GLNFAGVHDSYWTHACDVD+MNR+LREK
Sbjct: 279 MVTRQRTAFPPNFVHSLDGSHMMMTAVACKKEGLNFAGVHDSYWTHACDVDKMNRILREK 338

Query: 61  FVELYEAPVLENLLENFQKTFPTLNFPALPERGDFDLREVLESPYFFN 108
           FVELYE PVLENLLE+FQ +FP+L+FP+LPERGDFDLREVLESPYFFN
Sbjct: 339 FVELYETPVLENLLESFQSSFPSLSFPSLPERGDFDLREVLESPYFFN 386


>Glyma17g07940.1 
          Length = 984

 Score =  179 bits (454), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 80/108 (74%), Positives = 96/108 (88%), Gaps = 1/108 (0%)

Query: 2   TKRQRTAFAPNFVHSLDGSHMMMTAVACKKAGLNFAGVHDSYWTHACDVDEMNRVLREKF 61
            K+QR+AF PNFVHSLDGSHMMMTA+AC+ AGL FAGVHDS+WTHACDV++M+++LREKF
Sbjct: 877 AKKQRSAFPPNFVHSLDGSHMMMTALACRDAGLCFAGVHDSFWTHACDVEKMSQILREKF 936

Query: 62  VELYEAPVLENLLENFQKTFPTLNFPALPE-RGDFDLREVLESPYFFN 108
           VELY  P+LENLLE F+ ++P L FP LPE RGDFDL++VLESPYFFN
Sbjct: 937 VELYSMPILENLLEGFETSYPGLTFPPLPERRGDFDLQKVLESPYFFN 984


>Glyma04g24350.1 
          Length = 547

 Score =  179 bits (453), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 79/107 (73%), Positives = 93/107 (86%)

Query: 2   TKRQRTAFAPNFVHSLDGSHMMMTAVACKKAGLNFAGVHDSYWTHACDVDEMNRVLREKF 61
            K+QR+AF PNFVHSLD SHMMMTA+AC  AGL FAGVHDS+WTH CDV++MN++LREKF
Sbjct: 441 VKKQRSAFPPNFVHSLDSSHMMMTALACNDAGLCFAGVHDSFWTHPCDVEKMNQILREKF 500

Query: 62  VELYEAPVLENLLENFQKTFPTLNFPALPERGDFDLREVLESPYFFN 108
           VELY  P+LENLLE FQ T+P L FP LP+RGDFDL++VL+SPYFFN
Sbjct: 501 VELYNMPILENLLEGFQTTYPGLAFPPLPKRGDFDLQKVLDSPYFFN 547


>Glyma18g51160.1 
          Length = 924

 Score =  173 bits (439), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 86/101 (85%), Positives = 95/101 (94%)

Query: 1   MTKRQRTAFAPNFVHSLDGSHMMMTAVACKKAGLNFAGVHDSYWTHACDVDEMNRVLREK 60
           M  RQRTAF PNFVHSLDGSHMMMTAVACKK GL+FAGVHDSYWTHACDVD+MNR+LREK
Sbjct: 823 MVTRQRTAFPPNFVHSLDGSHMMMTAVACKKEGLSFAGVHDSYWTHACDVDKMNRILREK 882

Query: 61  FVELYEAPVLENLLENFQKTFPTLNFPALPERGDFDLREVL 101
           FVELYE PVLENLLE+FQ +FP+L+FP+LPERGDFDL+EVL
Sbjct: 883 FVELYETPVLENLLESFQSSFPSLSFPSLPERGDFDLKEVL 923


>Glyma06g24890.1 
          Length = 474

 Score =  166 bits (420), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 71/97 (73%), Positives = 84/97 (86%)

Query: 3   KRQRTAFAPNFVHSLDGSHMMMTAVACKKAGLNFAGVHDSYWTHACDVDEMNRVLREKFV 62
           K+QR+AF PNFVHSLD SHMMMTA+AC  AGL FAGVHDS+WTH CDV++MN++LREKFV
Sbjct: 378 KKQRSAFPPNFVHSLDSSHMMMTALACNDAGLCFAGVHDSFWTHPCDVEKMNQILREKFV 437

Query: 63  ELYEAPVLENLLENFQKTFPTLNFPALPERGDFDLRE 99
           ELY  P+LENLLE FQ T+P L FP LP+RGDFDL++
Sbjct: 438 ELYNMPILENLLEGFQTTYPGLAFPPLPKRGDFDLQK 474