Miyakogusa Predicted Gene

Lj0g3v0024429.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0024429.2 tr|D7LAT4|D7LAT4_ARALL Zinc finger family protein
OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_,60.49,9e-19,
,CUFF.1376.2
         (84 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g43120.1                                                       122   8e-29
Glyma20g23790.1                                                       122   1e-28
Glyma10g43120.3                                                       101   2e-22
Glyma12g06090.1                                                        59   2e-09
Glyma11g14110.2                                                        58   2e-09
Glyma11g14110.1                                                        58   2e-09
Glyma12g36650.2                                                        57   6e-09
Glyma12g36650.1                                                        57   6e-09
Glyma13g27330.2                                                        54   4e-08
Glyma13g27330.1                                                        54   4e-08
Glyma06g11960.1                                                        48   3e-06
Glyma13g20210.2                                                        46   9e-06
Glyma13g20210.4                                                        46   9e-06
Glyma13g20210.3                                                        46   9e-06
Glyma13g20210.1                                                        46   9e-06

>Glyma10g43120.1 
          Length = 344

 Score =  122 bits (307), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 60/74 (81%), Positives = 65/74 (87%)

Query: 1   MDEHGNNSQDAREDVDLDGLSYEELLALVEIVGIESRGLPTDTIAYLPSVKYKTGSDQHG 60
           ++EHG NSQDA EDVD D LSYEELLAL E+VG ESRGL TDTIA LPSV YKTGSDQHG
Sbjct: 229 IEEHGANSQDAWEDVDPDELSYEELLALSEVVGTESRGLSTDTIACLPSVNYKTGSDQHG 288

Query: 61  SNDSCVICRLDYED 74
           S+DSCVICR+DYED
Sbjct: 289 SHDSCVICRVDYED 302


>Glyma20g23790.1 
          Length = 335

 Score =  122 bits (306), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 61/74 (82%), Positives = 64/74 (86%)

Query: 1   MDEHGNNSQDAREDVDLDGLSYEELLALVEIVGIESRGLPTDTIAYLPSVKYKTGSDQHG 60
           ++EHG NSQDA EDVD D LSYEELLAL E VG ESRGL TDTIA LPSV YKTGSDQHG
Sbjct: 220 IEEHGANSQDAWEDVDPDELSYEELLALGEAVGTESRGLSTDTIACLPSVNYKTGSDQHG 279

Query: 61  SNDSCVICRLDYED 74
           SNDSCVICR+DYED
Sbjct: 280 SNDSCVICRVDYED 293


>Glyma10g43120.3 
          Length = 308

 Score =  101 bits (252), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 52/66 (78%), Positives = 56/66 (84%)

Query: 1   MDEHGNNSQDAREDVDLDGLSYEELLALVEIVGIESRGLPTDTIAYLPSVKYKTGSDQHG 60
           ++EHG NSQDA EDVD D LSYEELLAL E+VG ESRGL TDTIA LPSV YKTGSDQHG
Sbjct: 229 IEEHGANSQDAWEDVDPDELSYEELLALSEVVGTESRGLSTDTIACLPSVNYKTGSDQHG 288

Query: 61  SNDSCV 66
           S+DS V
Sbjct: 289 SHDSYV 294


>Glyma12g06090.1 
          Length = 248

 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 48/76 (63%), Gaps = 6/76 (7%)

Query: 4   HGNNSQD----AREDVDLDGLSYEELLALVEIVGIESRGLPTDTIAYLPSVKYKTGS--D 57
           H +NS D     ++++D D ++YEELL L E VG +SRGL  + I+ LP  KYK G    
Sbjct: 129 HHSNSNDYQVIWQDNIDPDNMTYEELLELGEAVGTQSRGLTQEQISSLPVSKYKCGFFLR 188

Query: 58  QHGSNDSCVICRLDYE 73
           +   ++ CVIC+++Y+
Sbjct: 189 KKSRDERCVICQMEYK 204


>Glyma11g14110.2 
          Length = 248

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 6/75 (8%)

Query: 4   HGNNSQD----AREDVDLDGLSYEELLALVEIVGIESRGLPTDTIAYLPSVKYKTGS--D 57
           H +NS D     ++++D D ++YEELL L E VG +SRGL  + I+ LP  KYK G    
Sbjct: 129 HHSNSNDYQVIWQDNIDPDNMTYEELLELGEAVGTQSRGLTQEQISSLPVSKYKCGFFLR 188

Query: 58  QHGSNDSCVICRLDY 72
           +   ++ CVIC+++Y
Sbjct: 189 KKSRDERCVICQMEY 203


>Glyma11g14110.1 
          Length = 248

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 6/75 (8%)

Query: 4   HGNNSQD----AREDVDLDGLSYEELLALVEIVGIESRGLPTDTIAYLPSVKYKTGS--D 57
           H +NS D     ++++D D ++YEELL L E VG +SRGL  + I+ LP  KYK G    
Sbjct: 129 HHSNSNDYQVIWQDNIDPDNMTYEELLELGEAVGTQSRGLTQEQISSLPVSKYKCGFFLR 188

Query: 58  QHGSNDSCVICRLDY 72
           +   ++ CVIC+++Y
Sbjct: 189 KKSRDERCVICQMEY 203


>Glyma12g36650.2 
          Length = 247

 Score = 56.6 bits (135), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 5/76 (6%)

Query: 2   DEHGNNSQDA---REDVDLDGLSYEELLALVEIVGIESRGLPTDTIAYLPSVKYKTGS-- 56
           + H +NS      ++++D D ++YEELL L E VG +SRGL  + I  LP+ KYK G+  
Sbjct: 128 NHHESNSSSQVIWQDNIDPDNMTYEELLDLGEAVGTQSRGLSQELIDMLPTSKYKFGNLF 187

Query: 57  DQHGSNDSCVICRLDY 72
            +  S   CVIC++ Y
Sbjct: 188 KRKNSGKRCVICQMTY 203


>Glyma12g36650.1 
          Length = 247

 Score = 56.6 bits (135), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 5/76 (6%)

Query: 2   DEHGNNSQDA---REDVDLDGLSYEELLALVEIVGIESRGLPTDTIAYLPSVKYKTGS-- 56
           + H +NS      ++++D D ++YEELL L E VG +SRGL  + I  LP+ KYK G+  
Sbjct: 128 NHHESNSSSQVIWQDNIDPDNMTYEELLDLGEAVGTQSRGLSQELIDMLPTSKYKFGNLF 187

Query: 57  DQHGSNDSCVICRLDY 72
            +  S   CVIC++ Y
Sbjct: 188 KRKNSGKRCVICQMTY 203


>Glyma13g27330.2 
          Length = 247

 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 5/76 (6%)

Query: 2   DEHGNNSQDA---REDVDLDGLSYEELLALVEIVGIESRGLPTDTIAYLPSVKYKTGS-- 56
           + H +NS      ++++  D ++YEELL L E VG +SRGL  + I  LP+ KYK GS  
Sbjct: 128 NHHESNSSSQVIWQDNIYPDDMTYEELLDLGEAVGTQSRGLSQELIDMLPTSKYKFGSLF 187

Query: 57  DQHGSNDSCVICRLDY 72
            +  S   CVIC++ Y
Sbjct: 188 KRKNSGKRCVICQMTY 203


>Glyma13g27330.1 
          Length = 247

 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 5/76 (6%)

Query: 2   DEHGNNSQDA---REDVDLDGLSYEELLALVEIVGIESRGLPTDTIAYLPSVKYKTGS-- 56
           + H +NS      ++++  D ++YEELL L E VG +SRGL  + I  LP+ KYK GS  
Sbjct: 128 NHHESNSSSQVIWQDNIYPDDMTYEELLDLGEAVGTQSRGLSQELIDMLPTSKYKFGSLF 187

Query: 57  DQHGSNDSCVICRLDY 72
            +  S   CVIC++ Y
Sbjct: 188 KRKNSGKRCVICQMTY 203


>Glyma06g11960.1 
          Length = 159

 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 36/60 (60%)

Query: 15  VDLDGLSYEELLALVEIVGIESRGLPTDTIAYLPSVKYKTGSDQHGSNDSCVICRLDYED 74
           +DLD LSYEEL+ L E +G E+RGL  + I+          ++     D CVIC+++YE+
Sbjct: 56  IDLDELSYEELMELEEFIGEETRGLSANEISLCLYPYTCQCAESKSGIDRCVICQVEYEE 115


>Glyma13g20210.2 
          Length = 540

 Score = 46.2 bits (108), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 8/76 (10%)

Query: 1   MDEHGNNSQDAREDVDLDGLSYEELLALVEIVGIESRGLPTDTIA-YLPSVKYKTGSDQH 59
           +D+H    +D R  +D+D +SYEELLAL E +G  S GL  D I+ YL    Y   S+Q 
Sbjct: 429 LDQH----RDMR--MDIDNMSYEELLALGERIGHVSTGLSEDLISKYLTETIY-CSSEQS 481

Query: 60  GSNDSCVICRLDYEDV 75
              ++C IC  +Y+++
Sbjct: 482 QEEETCAICLEEYKNM 497


>Glyma13g20210.4 
          Length = 550

 Score = 45.8 bits (107), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 8/76 (10%)

Query: 1   MDEHGNNSQDAREDVDLDGLSYEELLALVEIVGIESRGLPTDTIA-YLPSVKYKTGSDQH 59
           +D+H    +D R  +D+D +SYEELLAL E +G  S GL  D I+ YL    Y   S+Q 
Sbjct: 439 LDQH----RDMR--MDIDNMSYEELLALGERIGHVSTGLSEDLISKYLTETIY-CSSEQS 491

Query: 60  GSNDSCVICRLDYEDV 75
              ++C IC  +Y+++
Sbjct: 492 QEEETCAICLEEYKNM 507


>Glyma13g20210.3 
          Length = 550

 Score = 45.8 bits (107), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 8/76 (10%)

Query: 1   MDEHGNNSQDAREDVDLDGLSYEELLALVEIVGIESRGLPTDTIA-YLPSVKYKTGSDQH 59
           +D+H    +D R  +D+D +SYEELLAL E +G  S GL  D I+ YL    Y   S+Q 
Sbjct: 439 LDQH----RDMR--MDIDNMSYEELLALGERIGHVSTGLSEDLISKYLTETIY-CSSEQS 491

Query: 60  GSNDSCVICRLDYEDV 75
              ++C IC  +Y+++
Sbjct: 492 QEEETCAICLEEYKNM 507


>Glyma13g20210.1 
          Length = 550

 Score = 45.8 bits (107), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 8/76 (10%)

Query: 1   MDEHGNNSQDAREDVDLDGLSYEELLALVEIVGIESRGLPTDTIA-YLPSVKYKTGSDQH 59
           +D+H    +D R  +D+D +SYEELLAL E +G  S GL  D I+ YL    Y   S+Q 
Sbjct: 439 LDQH----RDMR--MDIDNMSYEELLALGERIGHVSTGLSEDLISKYLTETIY-CSSEQS 491

Query: 60  GSNDSCVICRLDYEDV 75
              ++C IC  +Y+++
Sbjct: 492 QEEETCAICLEEYKNM 507