Miyakogusa Predicted Gene

Lj0g3v0021209.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0021209.1 tr|A9TM45|A9TM45_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_196332,39.68,0.000000000000005, ,CUFF.1170.1
         (161 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma18g07200.1                                                       165   2e-41
Glyma14g37010.1                                                       161   3e-40
Glyma11g23380.1                                                        80   1e-15

>Glyma18g07200.1 
          Length = 134

 Score =  165 bits (418), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 88/161 (54%), Positives = 107/161 (66%), Gaps = 27/161 (16%)

Query: 1   MFPKRFQDPKSGFILLSSMRAKKYMNKIGLEGEDYHFFKQVGKALLCTYAILGALWLSNE 60
           MFPKRF+DPK+GF LLSSM AKKY+  IGLE EDYHFFK+VGK LLCTYA+LGALWL N 
Sbjct: 1   MFPKRFRDPKTGFHLLSSMHAKKYLKNIGLESEDYHFFKRVGKGLLCTYAVLGALWLYNN 60

Query: 61  NSTMDWGKLKPWPKEELVQDQLSRIREFLHLGDKGPEEFTDKGLMIGATSGLKGVDESDK 120
           NS++ W KLKP  KE                 ++  + F  +G MIG ++  KG+ ESDK
Sbjct: 61  NSSLGWEKLKPRLKEH----------------EEALKGFIAEGGMIGTSTSPKGMAESDK 104

Query: 121 DAENNQKELQSKKFDQEAQNLWLKMRNEVIAELKEKGFDVE 161
           +            FD+EAQ LWL+M+NEV  EL+EKGFDVE
Sbjct: 105 E-----------NFDEEAQKLWLRMKNEVKTELREKGFDVE 134


>Glyma14g37010.1 
          Length = 184

 Score =  161 bits (407), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 85/159 (53%), Positives = 112/159 (70%), Gaps = 4/159 (2%)

Query: 4   KRFQDPKSGFILLSSMRAKKYMNKIGLEGEDYHFFKQVGKALLCTYAILGALWLSNENST 63
           KRFQ+P+    L      + ++ KIGL  E+Y+F+KQ+GKALLCTYA++GA+W+ NE S 
Sbjct: 29  KRFQEPQPKTGL---QHTQDFLRKIGLGKENYYFWKQIGKALLCTYAVIGAVWVYNETSP 85

Query: 64  MDWGKLKPWPKEELVQDQLSRIREFLHLGDK-GPEEFTDKGLMIGATSGLKGVDESDKDA 122
           + W  LKP PKEEL    L   R+F + GD+   +EF  +G MIG T G KG+ E DKD 
Sbjct: 86  LGWWTLKPKPKEELELAHLYERRQFPYPGDEEAMQEFIARGGMIGTTIGPKGMVEGDKDE 145

Query: 123 ENNQKELQSKKFDQEAQNLWLKMRNEVIAELKEKGFDVE 161
            + +KEL+ KKF QEAQ LW++MR+EVIAEL+EKGFDVE
Sbjct: 146 SDYKKELKDKKFGQEAQKLWMRMRSEVIAELQEKGFDVE 184


>Glyma11g23380.1 
          Length = 83

 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/110 (47%), Positives = 61/110 (55%), Gaps = 27/110 (24%)

Query: 52  LGALWLSNENSTMDWGKLKPWPKEELVQDQLSRIREFLHLGDKGPEEFTDKGLMIGATSG 111
           LGALWL N NS++ WGKLKP         QL    E L       +EF  KG MIG T+ 
Sbjct: 1   LGALWLYNNNSSLGWGKLKP---------QLKEHEEAL-------KEFIAKGKMIGTTNS 44

Query: 112 LKGVDESDKDAENNQKELQSKKFDQEAQNLWLKMRNEVIAELKEKGFDVE 161
            KG  ESDK+            FD+EAQ LWL+M+NE+  EL E GFDVE
Sbjct: 45  PKGKAESDKE-----------NFDEEAQKLWLRMKNELKTELMENGFDVE 83