Miyakogusa Predicted Gene

Lj0g3v0019949.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0019949.1 Non Chatacterized Hit- tr|D8U9J1|D8U9J1_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,37.9,1e-18,TAFII55_N,TAFII55 protein, conserved region;
TRANSCRIPTION INITIATION FACTOR TFIID 55 KD
SUBUNIT-REL,NODE_21185_length_1088_cov_106.576286.path1.1
         (127 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g46640.3                                                       214   2e-56
Glyma06g46640.2                                                       214   2e-56
Glyma14g16680.1                                                       213   3e-56
Glyma06g46640.1                                                       213   3e-56
Glyma14g24450.1                                                       212   9e-56
Glyma11g17970.1                                                       203   4e-53
Glyma14g16680.3                                                       127   3e-30
Glyma06g46640.4                                                       127   3e-30
Glyma17g29810.1                                                       115   9e-27
Glyma14g16680.2                                                        61   2e-10

>Glyma06g46640.3 
          Length = 178

 Score =  214 bits (545), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 116/124 (93%), Positives = 118/124 (95%)

Query: 1   MEEQFILRVPPNVAERIERLLNENNPSSSEDKSLDLSFNEDGRSGTFAIEDEHFPASLLD 60
           MEEQFILRVPPNVAERIERLLNENN SSSEDKSLDLSF EDGRSGTF I +E FPASLLD
Sbjct: 1   MEEQFILRVPPNVAERIERLLNENNASSSEDKSLDLSFREDGRSGTFMIGNEQFPASLLD 60

Query: 61  LPCVVESYKTYDDNSLIKSADIGQMIMVRESGDAAPDEIEYRHGLTPPMRDARKRRFRRE 120
           LPCVVESYKTYDDNSLIK+ADIGQMIMVRESGDAAPD IEYRHGLTPPMRDARKRRFRRE
Sbjct: 61  LPCVVESYKTYDDNSLIKTADIGQMIMVRESGDAAPDVIEYRHGLTPPMRDARKRRFRRE 120

Query: 121 PDLN 124
           PDLN
Sbjct: 121 PDLN 124


>Glyma06g46640.2 
          Length = 125

 Score =  214 bits (544), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 117/125 (93%), Positives = 119/125 (95%)

Query: 1   MEEQFILRVPPNVAERIERLLNENNPSSSEDKSLDLSFNEDGRSGTFAIEDEHFPASLLD 60
           MEEQFILRVPPNVAERIERLLNENN SSSEDKSLDLSF EDGRSGTF I +E FPASLLD
Sbjct: 1   MEEQFILRVPPNVAERIERLLNENNASSSEDKSLDLSFREDGRSGTFMIGNEQFPASLLD 60

Query: 61  LPCVVESYKTYDDNSLIKSADIGQMIMVRESGDAAPDEIEYRHGLTPPMRDARKRRFRRE 120
           LPCVVESYKTYDDNSLIK+ADIGQMIMVRESGDAAPD IEYRHGLTPPMRDARKRRFRRE
Sbjct: 61  LPCVVESYKTYDDNSLIKTADIGQMIMVRESGDAAPDVIEYRHGLTPPMRDARKRRFRRE 120

Query: 121 PDLNV 125
           PDLNV
Sbjct: 121 PDLNV 125


>Glyma14g16680.1 
          Length = 200

 Score =  213 bits (543), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 116/124 (93%), Positives = 118/124 (95%)

Query: 1   MEEQFILRVPPNVAERIERLLNENNPSSSEDKSLDLSFNEDGRSGTFAIEDEHFPASLLD 60
           MEEQFILRVPPNVAERIERLLNENN SSSEDKSLDLSF EDGRSGTF I +E FPASLLD
Sbjct: 1   MEEQFILRVPPNVAERIERLLNENNASSSEDKSLDLSFREDGRSGTFMIGNEQFPASLLD 60

Query: 61  LPCVVESYKTYDDNSLIKSADIGQMIMVRESGDAAPDEIEYRHGLTPPMRDARKRRFRRE 120
           LPCVVESYKTYDDNSLIK+ADIGQMIMVRESGDAAPD IEYRHGLTPPMRDARKRRFRRE
Sbjct: 61  LPCVVESYKTYDDNSLIKTADIGQMIMVRESGDAAPDVIEYRHGLTPPMRDARKRRFRRE 120

Query: 121 PDLN 124
           PDLN
Sbjct: 121 PDLN 124


>Glyma06g46640.1 
          Length = 200

 Score =  213 bits (543), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 116/124 (93%), Positives = 118/124 (95%)

Query: 1   MEEQFILRVPPNVAERIERLLNENNPSSSEDKSLDLSFNEDGRSGTFAIEDEHFPASLLD 60
           MEEQFILRVPPNVAERIERLLNENN SSSEDKSLDLSF EDGRSGTF I +E FPASLLD
Sbjct: 1   MEEQFILRVPPNVAERIERLLNENNASSSEDKSLDLSFREDGRSGTFMIGNEQFPASLLD 60

Query: 61  LPCVVESYKTYDDNSLIKSADIGQMIMVRESGDAAPDEIEYRHGLTPPMRDARKRRFRRE 120
           LPCVVESYKTYDDNSLIK+ADIGQMIMVRESGDAAPD IEYRHGLTPPMRDARKRRFRRE
Sbjct: 61  LPCVVESYKTYDDNSLIKTADIGQMIMVRESGDAAPDVIEYRHGLTPPMRDARKRRFRRE 120

Query: 121 PDLN 124
           PDLN
Sbjct: 121 PDLN 124


>Glyma14g24450.1 
          Length = 200

 Score =  212 bits (539), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 115/124 (92%), Positives = 118/124 (95%)

Query: 1   MEEQFILRVPPNVAERIERLLNENNPSSSEDKSLDLSFNEDGRSGTFAIEDEHFPASLLD 60
           MEEQFILRVPPNVAERIERLLNENN SSSEDKSLDLSF EDGRSGTF I +E FPASLLD
Sbjct: 1   MEEQFILRVPPNVAERIERLLNENNASSSEDKSLDLSFREDGRSGTFMIGNEQFPASLLD 60

Query: 61  LPCVVESYKTYDDNSLIKSADIGQMIMVRESGDAAPDEIEYRHGLTPPMRDARKRRFRRE 120
           LPCVVESYKTYDDNSLIK+A+IGQMIMVRESGDAAPD IEYRHGLTPPMRDARKRRFRRE
Sbjct: 61  LPCVVESYKTYDDNSLIKTANIGQMIMVRESGDAAPDVIEYRHGLTPPMRDARKRRFRRE 120

Query: 121 PDLN 124
           PDLN
Sbjct: 121 PDLN 124


>Glyma11g17970.1 
          Length = 164

 Score =  203 bits (516), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 114/125 (91%), Positives = 117/125 (93%), Gaps = 1/125 (0%)

Query: 1   MEEQFILRVPPNVAERIERLLNENNPSSSEDKSLDLSFNEDGRSGTFAIEDEHFPASLLD 60
           MEEQFILRVPPNVAERIE LLNENN  SSEDKSLDLSF+EDGRSGTF I +EHF ASLLD
Sbjct: 1   MEEQFILRVPPNVAERIECLLNENNAPSSEDKSLDLSFSEDGRSGTFMIGNEHFAASLLD 60

Query: 61  LPCVVESY-KTYDDNSLIKSADIGQMIMVRESGDAAPDEIEYRHGLTPPMRDARKRRFRR 119
           LPCVVESY KTYDDNSLIK+ADIGQMIMVRESGDAAPD IEYRHGLTPPMRDARKRRFRR
Sbjct: 61  LPCVVESYNKTYDDNSLIKTADIGQMIMVRESGDAAPDVIEYRHGLTPPMRDARKRRFRR 120

Query: 120 EPDLN 124
           EPDLN
Sbjct: 121 EPDLN 125


>Glyma14g16680.3 
          Length = 153

 Score =  127 bits (319), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 73/76 (96%)

Query: 49  IEDEHFPASLLDLPCVVESYKTYDDNSLIKSADIGQMIMVRESGDAAPDEIEYRHGLTPP 108
           I +E FPASLLDLPCVVESYKTYDDNSLIK+ADIGQMIMVRESGDAAPD IEYRHGLTPP
Sbjct: 2   IGNEQFPASLLDLPCVVESYKTYDDNSLIKTADIGQMIMVRESGDAAPDVIEYRHGLTPP 61

Query: 109 MRDARKRRFRREPDLN 124
           MRDARKRRFRREPDLN
Sbjct: 62  MRDARKRRFRREPDLN 77


>Glyma06g46640.4 
          Length = 153

 Score =  127 bits (319), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 73/76 (96%)

Query: 49  IEDEHFPASLLDLPCVVESYKTYDDNSLIKSADIGQMIMVRESGDAAPDEIEYRHGLTPP 108
           I +E FPASLLDLPCVVESYKTYDDNSLIK+ADIGQMIMVRESGDAAPD IEYRHGLTPP
Sbjct: 2   IGNEQFPASLLDLPCVVESYKTYDDNSLIKTADIGQMIMVRESGDAAPDVIEYRHGLTPP 61

Query: 109 MRDARKRRFRREPDLN 124
           MRDARKRRFRREPDLN
Sbjct: 62  MRDARKRRFRREPDLN 77


>Glyma17g29810.1 
          Length = 205

 Score =  115 bits (289), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 56/65 (86%), Positives = 60/65 (92%), Gaps = 1/65 (1%)

Query: 36 LSFNEDGRSGTFAIEDEHFPASLLDLPCVVESY-KTYDDNSLIKSADIGQMIMVRESGDA 94
          LSF+EDGRSGTF I +EHFPASLLDLPCVVESY KTYDDNSL K+ADIGQMIMVRESGDA
Sbjct: 28 LSFSEDGRSGTFMIGNEHFPASLLDLPCVVESYNKTYDDNSLTKTADIGQMIMVRESGDA 87

Query: 95 APDEI 99
          APD +
Sbjct: 88 APDTL 92


>Glyma14g16680.2 
          Length = 116

 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/40 (97%), Positives = 39/40 (97%)

Query: 85  MIMVRESGDAAPDEIEYRHGLTPPMRDARKRRFRREPDLN 124
           MIMVRESGDAAPD IEYRHGLTPPMRDARKRRFRREPDLN
Sbjct: 1   MIMVRESGDAAPDVIEYRHGLTPPMRDARKRRFRREPDLN 40