Miyakogusa Predicted Gene

Lj0g3v0018339.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0018339.1 Non Chatacterized Hit- tr|J3LF66|J3LF66_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB02G3,34.62,0.000000000000007,seg,NULL; DUF1771,Domain of unknown
function DUF1771; Smr,Smr protein/MutS2 C-terminal; SMR,Smr
prot,CUFF.1060.1
         (164 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma18g07040.1                                                       264   3e-71
Glyma11g26980.1                                                       262   1e-70
Glyma18g07040.2                                                       209   1e-54
Glyma13g31400.1                                                        65   3e-11
Glyma06g06030.2                                                        50   1e-06
Glyma06g06030.1                                                        50   1e-06
Glyma04g06010.1                                                        50   1e-06
Glyma09g37990.2                                                        48   4e-06
Glyma09g37990.1                                                        48   5e-06

>Glyma18g07040.1 
          Length = 509

 Score =  264 bits (674), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 125/151 (82%), Positives = 137/151 (90%)

Query: 1   MNWRNVAKKLQSLGPGFDVCPNVAESQKRTYPKGDEYLVCREDAKQHWGSMKSYYQKAAT 60
           MNWRNV KK+QSLGPGF+V P+VAESQ+ T  KGDEY V RED+KQ W S+KSYY KAAT
Sbjct: 309 MNWRNVVKKIQSLGPGFNVSPHVAESQQHTCGKGDEYHVFREDSKQQWDSVKSYYTKAAT 368

Query: 61  AFTRGDRAYAAYLSDQGKEQTKLAQKADTKASHDIFVARNKDIENVITIDLHGQHVKPAM 120
           A+T+ +RAYAAYLSDQGKEQT+LAQKADTKASHDIF+ARNK IEN+ITIDLHGQHVK AM
Sbjct: 369 AYTKRERAYAAYLSDQGKEQTRLAQKADTKASHDIFIARNKGIENMITIDLHGQHVKQAM 428

Query: 121 RMLKLHLLFGSYVPSVQTLRVITGCGSHGVG 151
           RMLKLHLLFGSYVP VQTLRVITGCGSHGVG
Sbjct: 429 RMLKLHLLFGSYVPCVQTLRVITGCGSHGVG 459


>Glyma11g26980.1 
          Length = 509

 Score =  262 bits (670), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 127/151 (84%), Positives = 137/151 (90%), Gaps = 3/151 (1%)

Query: 1   MNWRNVAKKLQSLGPGFDVCPNVAESQKRTYPKGDEYLVCREDAKQHWGSMKSYYQKAAT 60
           MNWRNV KK+QSLGPGF V P+VAESQ+   PKGDEY V RED+++ W S+KSYY KAAT
Sbjct: 312 MNWRNVVKKIQSLGPGFYVSPHVAESQQ---PKGDEYHVFREDSRKQWDSVKSYYTKAAT 368

Query: 61  AFTRGDRAYAAYLSDQGKEQTKLAQKADTKASHDIFVARNKDIENVITIDLHGQHVKPAM 120
           A+T+ +RAYAAYLSDQGKEQTKLAQKADTKASHDIFVARNK IENVITIDLHGQHVK AM
Sbjct: 369 AYTKRERAYAAYLSDQGKEQTKLAQKADTKASHDIFVARNKGIENVITIDLHGQHVKQAM 428

Query: 121 RMLKLHLLFGSYVPSVQTLRVITGCGSHGVG 151
           RMLKLHLLFGSYVPSVQTLRVITGCGSHGVG
Sbjct: 429 RMLKLHLLFGSYVPSVQTLRVITGCGSHGVG 459


>Glyma18g07040.2 
          Length = 507

 Score =  209 bits (532), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 103/130 (79%), Positives = 111/130 (85%), Gaps = 11/130 (8%)

Query: 33  KGDEYLVCREDAKQHWGSMKSYYQK-----------AATAFTRGDRAYAAYLSDQGKEQT 81
           KGDEY V RED+KQ W S+KSYY K           AATA+T+ +RAYAAYLSDQGKEQT
Sbjct: 328 KGDEYHVFREDSKQQWDSVKSYYTKLRTYKGAIILQAATAYTKRERAYAAYLSDQGKEQT 387

Query: 82  KLAQKADTKASHDIFVARNKDIENVITIDLHGQHVKPAMRMLKLHLLFGSYVPSVQTLRV 141
           +LAQKADTKASHDIF+ARNK IEN+ITIDLHGQHVK AMRMLKLHLLFGSYVPSVQTLRV
Sbjct: 388 RLAQKADTKASHDIFIARNKGIENMITIDLHGQHVKQAMRMLKLHLLFGSYVPSVQTLRV 447

Query: 142 ITGCGSHGVG 151
           ITGCGSHGVG
Sbjct: 448 ITGCGSHGVG 457


>Glyma13g31400.1 
          Length = 496

 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 61/108 (56%), Gaps = 1/108 (0%)

Query: 35  DEYLVCREDAKQHWGSMKSYYQKAATAFTRGDRAYAAYLSDQGKEQTKLAQKADTKASHD 94
           +EY   R   K++ G+M  YY+ A  +F +GD+  A  L +QG+   + A  AD +++  
Sbjct: 335 EEYKNVRRAVKEYRGTMNEYYKAAVDSFAKGDQMKAEKLLEQGQFFLRKAHDADEESNKM 394

Query: 95  IFVARNKDIENVITIDLHGQHVKPAMRMLKLHLLFGSYVPSVQTLRVI 142
           I   RN + + ++ +DL     K A+R+LK HL   S +PS + L+VI
Sbjct: 395 ILETRNTEAQEMV-LDLRDHGSKEAIRLLKCHLSSLSGIPSFEYLKVI 441


>Glyma06g06030.2 
          Length = 579

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 64/127 (50%), Gaps = 12/127 (9%)

Query: 37  YLVCREDAKQHWGSMKSYYQKAATAFTRGDRAYAAYLSDQGKEQTKLAQKADTKASHDIF 96
           Y   RE+A+ H     +Y+++A  A+  G++A A  LS +G+      + A  KA   I+
Sbjct: 418 YSELREEARDHACLRNAYFEQAQQAYLIGNKALAKELSAKGQLHNMHMKVAHGKAQESIY 477

Query: 97  VARN---KDIE-----NVITIDLHGQHVKPAMRMLK--LHLLFGSYVPSVQTLRV--ITG 144
           + RN    +++     N   IDLHG H   A+ +LK  L +L  + + + Q L+V  + G
Sbjct: 478 LQRNPVAPELQGDGRGNERIIDLHGLHASEAIHVLKHELSVLKSTAIAAEQRLQVYILVG 537

Query: 145 CGSHGVG 151
            G H  G
Sbjct: 538 TGHHTRG 544


>Glyma06g06030.1 
          Length = 579

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 64/127 (50%), Gaps = 12/127 (9%)

Query: 37  YLVCREDAKQHWGSMKSYYQKAATAFTRGDRAYAAYLSDQGKEQTKLAQKADTKASHDIF 96
           Y   RE+A+ H     +Y+++A  A+  G++A A  LS +G+      + A  KA   I+
Sbjct: 418 YSELREEARDHACLRNAYFEQAQQAYLIGNKALAKELSAKGQLHNMHMKVAHGKAQESIY 477

Query: 97  VARN---KDIE-----NVITIDLHGQHVKPAMRMLK--LHLLFGSYVPSVQTLRV--ITG 144
           + RN    +++     N   IDLHG H   A+ +LK  L +L  + + + Q L+V  + G
Sbjct: 478 LQRNPVAPELQGDGRGNERIIDLHGLHASEAIHVLKHELSVLKSTAIAAEQRLQVYILVG 537

Query: 145 CGSHGVG 151
            G H  G
Sbjct: 538 TGHHTRG 544


>Glyma04g06010.1 
          Length = 482

 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 62/124 (50%), Gaps = 12/124 (9%)

Query: 40  CREDAKQHWGSMKSYYQKAATAFTRGDRAYAAYLSDQGKEQTKLAQKADTKASHDIFVAR 99
            RE+A+ H     +Y+++A  A+  GD+A A  LS +G+      + A  KA   I+  R
Sbjct: 324 LREEARDHACLRNAYFEQAQQAYLIGDKALAKELSAKGQLHNMHMKAAHGKAQESIYRQR 383

Query: 100 N---KDIE-----NVITIDLHGQHVKPAMRMLK--LHLLFGSYVPSVQTLRV--ITGCGS 147
           N    +++     N   +DLHG H   A+ +LK  L +L  + + + Q L+V  + G G 
Sbjct: 384 NPVAPEVQGNGRGNERIVDLHGLHASEAIHVLKHELSVLKSTAIAAEQRLQVYILVGTGH 443

Query: 148 HGVG 151
           H  G
Sbjct: 444 HTRG 447


>Glyma09g37990.2 
          Length = 373

 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 1/93 (1%)

Query: 35  DEYLVCREDAKQHWGSMKSYYQKAATAFTRGDRAYAAYLSDQGKEQTKLAQKADTKASHD 94
           D Y+  R+DA +   S   + + A++AF RGD   A + S + + +   A++ ++ A+  
Sbjct: 187 DIYISNRKDALRTMRSASRHSRAASSAFLRGDHFSAQHHSMKARAERHTAEELNSDAAKK 246

Query: 95  IFVARNKDIENVITIDLHGQHVKPAMRMLKLHL 127
           I   RN +  ++  +DLHG H   A++ L+ HL
Sbjct: 247 ILSVRNNE-NDIWKLDLHGLHATEAIQALQEHL 278


>Glyma09g37990.1 
          Length = 419

 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 1/93 (1%)

Query: 35  DEYLVCREDAKQHWGSMKSYYQKAATAFTRGDRAYAAYLSDQGKEQTKLAQKADTKASHD 94
           D Y+  R+DA +   S   + + A++AF RGD   A + S + + +   A++ ++ A+  
Sbjct: 241 DIYISNRKDALRTMRSASRHSRAASSAFLRGDHFSAQHHSMKARAERHTAEELNSDAAKK 300

Query: 95  IFVARNKDIENVITIDLHGQHVKPAMRMLKLHL 127
           I   RN +  ++  +DLHG H   A++ L+ HL
Sbjct: 301 ILSVRNNE-NDIWKLDLHGLHATEAIQALQEHL 332