Miyakogusa Predicted Gene
- Lj0g3v0012939.3
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0012939.3 tr|Q0JHE8|Q0JHE8_ORYSJ Os01g0867800 protein
OS=Oryza sativa subsp. japonica GN=Os01g0867800 PE=2
SV=,57.89,2e-18,RRM_5,NULL; seg,NULL; HETEROGENEOUS NUCLEAR
RIBONUCLEOPROTEIN,NULL; RRM,RNA recognition motif domain,CUFF.702.3
(137 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma02g08870.1 158 1e-39
Glyma10g36770.1 154 2e-38
Glyma20g30820.1 152 8e-38
Glyma14g33580.1 127 4e-30
Glyma16g27970.1 106 6e-24
Glyma06g13130.2 49 2e-06
Glyma06g13130.1 49 2e-06
Glyma04g41660.1 48 2e-06
Glyma14g30490.2 48 3e-06
Glyma14g30490.1 48 3e-06
>Glyma02g08870.1
Length = 439
Score = 158 bits (400), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 75/83 (90%), Positives = 79/83 (95%)
Query: 15 FSQNDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAVSALQFYANVQPSIRGRNVYVQ 74
S+NDLLQLFQPFGVITKLVMLRAKNQALLQMQD+PSAV+ALQFYANVQPSIRGRNVYVQ
Sbjct: 17 ISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDIPSAVNALQFYANVQPSIRGRNVYVQ 76
Query: 75 FSSHQELTTMDQTQAREDEAFRL 97
FSSHQELTTMDQ QAREDE R+
Sbjct: 77 FSSHQELTTMDQNQAREDEPNRI 99
>Glyma10g36770.1
Length = 443
Score = 154 bits (390), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 73/83 (87%), Positives = 78/83 (93%)
Query: 15 FSQNDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAVSALQFYANVQPSIRGRNVYVQ 74
S+NDLLQLFQPFGVITKLVMLRAKNQAL+QMQDVPSAV+ALQFYANVQPSIRGRNVYVQ
Sbjct: 17 ISENDLLQLFQPFGVITKLVMLRAKNQALIQMQDVPSAVNALQFYANVQPSIRGRNVYVQ 76
Query: 75 FSSHQELTTMDQTQAREDEAFRL 97
FSSHQELTTMDQ+Q R DE R+
Sbjct: 77 FSSHQELTTMDQSQGRGDEPNRI 99
>Glyma20g30820.1
Length = 443
Score = 152 bits (385), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 72/83 (86%), Positives = 78/83 (93%)
Query: 15 FSQNDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAVSALQFYANVQPSIRGRNVYVQ 74
S+NDLLQLFQPFGVITKLVMLRAKNQAL+QMQDVPSAV+ALQFYANVQPSIRGRNVYVQ
Sbjct: 17 ISENDLLQLFQPFGVITKLVMLRAKNQALIQMQDVPSAVNALQFYANVQPSIRGRNVYVQ 76
Query: 75 FSSHQELTTMDQTQAREDEAFRL 97
FSSHQELTTM+Q+Q R DE R+
Sbjct: 77 FSSHQELTTMEQSQGRGDEPNRI 99
>Glyma14g33580.1
Length = 218
Score = 127 bits (319), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 58/71 (81%), Positives = 65/71 (91%)
Query: 23 LFQPFGVITKLVMLRAKNQALLQMQDVPSAVSALQFYANVQPSIRGRNVYVQFSSHQELT 82
LFQPFGVITKLVML KN+ L+QMQ VPS+V+AL+FYANVQP+IRGRNVYVQFSSHQELT
Sbjct: 1 LFQPFGVITKLVMLCTKNEVLVQMQHVPSSVNALKFYANVQPNIRGRNVYVQFSSHQELT 60
Query: 83 TMDQTQAREDE 93
TMDQ+Q R DE
Sbjct: 61 TMDQSQGRGDE 71
>Glyma16g27970.1
Length = 463
Score = 106 bits (265), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 52/58 (89%), Positives = 55/58 (94%), Gaps = 1/58 (1%)
Query: 42 ALLQMQDVPSAVSALQFYANVQPSIRGRNVYVQFSSHQELTTMDQTQAREDE-AFRLS 98
ALLQMQD+PSAV+ALQFYANVQPSIRGRNVYVQFSSHQELTTMDQ QAREDE +F LS
Sbjct: 34 ALLQMQDIPSAVNALQFYANVQPSIRGRNVYVQFSSHQELTTMDQNQAREDEFSFSLS 91
>Glyma06g13130.2
Length = 432
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 51/78 (65%), Gaps = 8/78 (10%)
Query: 16 SQNDLLQLFQPFG--VITKLVMLRAKNQALLQMQDVPSAVSALQFYANV-QPS-IRGRNV 71
++ +L++L +PFG V TK + +NQA ++ D+ A++ + +YA+ +P+ +RG+ V
Sbjct: 30 TEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTV 89
Query: 72 YVQFSSHQEL----TTMD 85
Y+Q+S+ QE+ TT D
Sbjct: 90 YLQYSNRQEIVNNKTTAD 107
>Glyma06g13130.1
Length = 432
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 51/78 (65%), Gaps = 8/78 (10%)
Query: 16 SQNDLLQLFQPFG--VITKLVMLRAKNQALLQMQDVPSAVSALQFYANV-QPS-IRGRNV 71
++ +L++L +PFG V TK + +NQA ++ D+ A++ + +YA+ +P+ +RG+ V
Sbjct: 30 TEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTV 89
Query: 72 YVQFSSHQEL----TTMD 85
Y+Q+S+ QE+ TT D
Sbjct: 90 YLQYSNRQEIVNNKTTAD 107
>Glyma04g41660.1
Length = 433
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 48/70 (68%), Gaps = 4/70 (5%)
Query: 16 SQNDLLQLFQPFG--VITKLVMLRAKNQALLQMQDVPSAVSALQFYANV-QPS-IRGRNV 71
++ +L++L +PFG V TK + +NQA ++ D+ A++ + +YA+ +P+ +RG+ V
Sbjct: 30 TEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTV 89
Query: 72 YVQFSSHQEL 81
Y+Q+S+ QE+
Sbjct: 90 YLQYSNRQEI 99
>Glyma14g30490.2
Length = 428
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 48/70 (68%), Gaps = 4/70 (5%)
Query: 16 SQNDLLQLFQPFG--VITKLVMLRAKNQALLQMQDVPSAVSALQFYANV-QPS-IRGRNV 71
++ +L++L +PFG V TK + +NQA ++ D+ A++ + +YA+ +P+ +RG+ V
Sbjct: 30 TEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTV 89
Query: 72 YVQFSSHQEL 81
Y+Q+S+ QE+
Sbjct: 90 YLQYSNRQEI 99
>Glyma14g30490.1
Length = 428
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 48/70 (68%), Gaps = 4/70 (5%)
Query: 16 SQNDLLQLFQPFG--VITKLVMLRAKNQALLQMQDVPSAVSALQFYANV-QPS-IRGRNV 71
++ +L++L +PFG V TK + +NQA ++ D+ A++ + +YA+ +P+ +RG+ V
Sbjct: 30 TEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTV 89
Query: 72 YVQFSSHQEL 81
Y+Q+S+ QE+
Sbjct: 90 YLQYSNRQEI 99