Miyakogusa Predicted Gene

Lj0g3v0008779.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0008779.1 tr|B9HHY4|B9HHY4_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_564111 PE=4
SV=1,31.17,0.000000000002,DUF565,Uncharacterised protein family Ycf20;
seg,NULL,CUFF.511.1
         (181 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma01g33620.1                                                       213   1e-55
Glyma03g03290.1                                                       152   3e-37
Glyma08g07240.1                                                        67   1e-11
Glyma07g30060.3                                                        66   2e-11
Glyma07g30060.2                                                        66   2e-11
Glyma07g30060.1                                                        66   2e-11

>Glyma01g33620.1 
          Length = 197

 Score =  213 bits (541), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 109/162 (67%), Positives = 124/162 (76%), Gaps = 1/162 (0%)

Query: 1   MLLVTGVMLSNYMTCARAISIDQISSRASKVGLSAFFYKTTFGQKQCAPCFSVIFAQPCL 60
           ML  T +  S+ MT A+  S+D + S  SKVGL+ FFYKTTFGQKQC P F   FAQPCL
Sbjct: 1   MLFATRMRSSSCMTRAQVKSLDCVGSGVSKVGLAVFFYKTTFGQKQCCPSF-FGFAQPCL 59

Query: 61  MINLRKMTWSVRXXXXXXXXXXXXXXGTNGRTRIIKVIQEFRTKLGSKVQEVKKNLPMKL 120
            +N ++M WSVR              G+NGRTRII+VIQEF+TKLGSK+QEVKKNLPMKL
Sbjct: 60  TVNFKRMIWSVRSSLNDSSFSPSTSNGSNGRTRIIRVIQEFQTKLGSKIQEVKKNLPMKL 119

Query: 121 LFFLAGFYCATAFSTVIGQTGDWDILSAALAVFVVEGIGALI 162
           LFFL GFYCATAF+TVIGQTGDWDILSAALAV VVEGIGAL+
Sbjct: 120 LFFLVGFYCATAFATVIGQTGDWDILSAALAVAVVEGIGALM 161


>Glyma03g03290.1 
          Length = 176

 Score =  152 bits (383), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 78/120 (65%), Positives = 86/120 (71%), Gaps = 2/120 (1%)

Query: 56  AQPCLMINLRKMTWSVRXXXXXXXXXXXXXXGTNGRTRIIKVIQEFRTKLGSKVQEVKKN 115
           A    M   R+MTWSVR               TNGRTRII+VIQEF+TKLGSK+QEVKKN
Sbjct: 34  ALAFFMFLFRRMTWSVRSSLNDSSFSPSTSNSTNGRTRIIRVIQEFQTKLGSKIQEVKKN 93

Query: 116 LPMKLLFFLAGFYCATAFSTVIGQTGDWDILSAALAVFVVEGIGALIN--PFPANRNSQC 173
           LP+KL FFL GFYCATAF+TVIGQTGDWDILSAALAV VVEGIGAL+     P  R S+ 
Sbjct: 94  LPLKLFFFLVGFYCATAFATVIGQTGDWDILSAALAVAVVEGIGALMYRASLPLVRKSRS 153


>Glyma08g07240.1 
          Length = 207

 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 49/77 (63%)

Query: 90  GRTRIIKVIQEFRTKLGSKVQEVKKNLPMKLLFFLAGFYCATAFSTVIGQTGDWDILSAA 149
           G TR+ +++     +L  K+   +KN+P+K+   L GFY A A +T++GQTGDWD+L A 
Sbjct: 96  GGTRLGRILSAGGRQLLEKLNAARKNIPLKVFLLLLGFYTANALATILGQTGDWDVLVAG 155

Query: 150 LAVFVVEGIGALINPFP 166
           + V  +EGIG LI   P
Sbjct: 156 VVVAAIEGIGMLIYRKP 172


>Glyma07g30060.3 
          Length = 208

 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/73 (43%), Positives = 48/73 (65%)

Query: 90  GRTRIIKVIQEFRTKLGSKVQEVKKNLPMKLLFFLAGFYCATAFSTVIGQTGDWDILSAA 149
           G TR+ +++     +L  K+   +KN+P+K+   L GFY A A +T++GQTGDWD+L A 
Sbjct: 97  GGTRLGRILTAGGRQLLEKLNSARKNIPLKVFLLLLGFYTANALATILGQTGDWDVLVAG 156

Query: 150 LAVFVVEGIGALI 162
           + V  +EGIG LI
Sbjct: 157 VVVAAIEGIGMLI 169


>Glyma07g30060.2 
          Length = 208

 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/73 (43%), Positives = 48/73 (65%)

Query: 90  GRTRIIKVIQEFRTKLGSKVQEVKKNLPMKLLFFLAGFYCATAFSTVIGQTGDWDILSAA 149
           G TR+ +++     +L  K+   +KN+P+K+   L GFY A A +T++GQTGDWD+L A 
Sbjct: 97  GGTRLGRILTAGGRQLLEKLNSARKNIPLKVFLLLLGFYTANALATILGQTGDWDVLVAG 156

Query: 150 LAVFVVEGIGALI 162
           + V  +EGIG LI
Sbjct: 157 VVVAAIEGIGMLI 169


>Glyma07g30060.1 
          Length = 208

 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/73 (43%), Positives = 48/73 (65%)

Query: 90  GRTRIIKVIQEFRTKLGSKVQEVKKNLPMKLLFFLAGFYCATAFSTVIGQTGDWDILSAA 149
           G TR+ +++     +L  K+   +KN+P+K+   L GFY A A +T++GQTGDWD+L A 
Sbjct: 97  GGTRLGRILTAGGRQLLEKLNSARKNIPLKVFLLLLGFYTANALATILGQTGDWDVLVAG 156

Query: 150 LAVFVVEGIGALI 162
           + V  +EGIG LI
Sbjct: 157 VVVAAIEGIGMLI 169