Miyakogusa Predicted Gene

Lj0g3v0007429.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0007429.2 Non Chatacterized Hit- tr|F6HE76|F6HE76_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,87.76,3.9937e-43,LSM,Ribonucleoprotein LSM domain; no
description,NULL; LSM1,NULL; snRNP Sm
proteins,Ribonucleoprotei,CUFF.425.2
         (98 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma15g40590.2                                                       180   2e-46
Glyma15g40590.1                                                       180   2e-46
Glyma08g18410.1                                                       180   2e-46
Glyma08g18410.2                                                       168   1e-42
Glyma14g10870.1                                                        75   2e-14
Glyma07g04580.1                                                        63   5e-11
Glyma16g01160.1                                                        58   2e-09

>Glyma15g40590.2 
          Length = 98

 Score =  180 bits (457), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 89/98 (90%), Positives = 94/98 (95%)

Query: 1  MSTGPGLESLVDQQISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQIVLG 60
          MS GPGLESLVDQ ISVITNDGRNIVGVLKGFDQATNIILDESHERV+STKEGVQQ+VLG
Sbjct: 1  MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60

Query: 61 LYIIRGDNISVVGELDLDLDRSLDMTKLRAHPLKPVIH 98
          LYIIRGDNISVVGELD +LD SLD++KLRAHPLKPVIH
Sbjct: 61 LYIIRGDNISVVGELDEELDSSLDLSKLRAHPLKPVIH 98


>Glyma15g40590.1 
          Length = 98

 Score =  180 bits (457), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 89/98 (90%), Positives = 94/98 (95%)

Query: 1  MSTGPGLESLVDQQISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQIVLG 60
          MS GPGLESLVDQ ISVITNDGRNIVGVLKGFDQATNIILDESHERV+STKEGVQQ+VLG
Sbjct: 1  MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60

Query: 61 LYIIRGDNISVVGELDLDLDRSLDMTKLRAHPLKPVIH 98
          LYIIRGDNISVVGELD +LD SLD++KLRAHPLKPVIH
Sbjct: 61 LYIIRGDNISVVGELDEELDSSLDLSKLRAHPLKPVIH 98


>Glyma08g18410.1 
          Length = 98

 Score =  180 bits (457), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 89/98 (90%), Positives = 94/98 (95%)

Query: 1  MSTGPGLESLVDQQISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQIVLG 60
          MS GPGLESLVDQ ISVITNDGRNIVGVLKGFDQATNIILDESHERV+STKEGVQQ+VLG
Sbjct: 1  MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60

Query: 61 LYIIRGDNISVVGELDLDLDRSLDMTKLRAHPLKPVIH 98
          LYIIRGDNISVVGELD +LD SLD++KLRAHPLKPVIH
Sbjct: 61 LYIIRGDNISVVGELDEELDSSLDLSKLRAHPLKPVIH 98


>Glyma08g18410.2 
          Length = 94

 Score =  168 bits (425), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 85/98 (86%), Positives = 91/98 (92%), Gaps = 4/98 (4%)

Query: 1  MSTGPGLESLVDQQISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQIVLG 60
          MS GPGLESLVD    +ITNDGRNIVGVLKGFDQATNIILDESHERV+STKEGVQQ+VLG
Sbjct: 1  MSAGPGLESLVD----LITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 56

Query: 61 LYIIRGDNISVVGELDLDLDRSLDMTKLRAHPLKPVIH 98
          LYIIRGDNISVVGELD +LD SLD++KLRAHPLKPVIH
Sbjct: 57 LYIIRGDNISVVGELDEELDSSLDLSKLRAHPLKPVIH 94


>Glyma14g10870.1 
          Length = 46

 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/47 (78%), Positives = 41/47 (87%), Gaps = 1/47 (2%)

Query: 52 EGVQQIVLGLYIIRGDNISVVGELDLDLDRSLDMTKLRAHPLKPVIH 98
          EGVQ +V GLYI RGDNISVVGELD DLD S+D +KLRAHPLKP+IH
Sbjct: 1  EGVQ-LVFGLYINRGDNISVVGELDEDLDSSMDFSKLRAHPLKPIIH 46


>Glyma07g04580.1 
          Length = 128

 Score = 63.2 bits (152), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 49/72 (68%), Gaps = 1/72 (1%)

Query: 7  LESLVDQQISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQIVLGLYIIRG 66
          L S +D+++ V+  DGR ++G L+ FDQ  N +L+ + ERV    +    I LGLY+IRG
Sbjct: 15 LASYLDKKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVI-VGDLYCDIPLGLYVIRG 73

Query: 67 DNISVVGELDLD 78
          +N+ ++GELDL+
Sbjct: 74 ENVVLIGELDLE 85


>Glyma16g01160.1 
          Length = 110

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 45/66 (68%), Gaps = 1/66 (1%)

Query: 13 QQISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQIVLGLYIIRGDNISVV 72
          +++ V+  DGR ++G L+ FDQ  N +L+ + ERV    +    I LGLY+IRG+N+ ++
Sbjct: 3  EKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVI-VGDLYCDIPLGLYVIRGENVVLI 61

Query: 73 GELDLD 78
          GELDL+
Sbjct: 62 GELDLE 67