Miyakogusa Predicted Gene

Lj0g3v0006349.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0006349.1 tr|B9P5L7|B9P5L7_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_590322 PE=4
SV=1,34.11,0.00000001, ,CUFF.380.1
         (119 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g13870.1                                                        58   3e-09
Glyma04g36440.1                                                        48   2e-06

>Glyma08g13870.1 
          Length = 733

 Score = 57.8 bits (138), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 45/130 (34%), Positives = 61/130 (46%), Gaps = 30/130 (23%)

Query: 16  IRVESMWNSKFKRRKQWTM--------------TRDQGWAVASQGT-TVQEGQHRAIEAH 60
           +R+ESMW+SK ++ K                  + D GWAV SQGT  + +G+    +  
Sbjct: 605 VRLESMWHSKSQQSKTVENDHIMHEVMRILTYDSGDPGWAVISQGTGKMAQGKG---DTF 661

Query: 61  LLCALMNMTSGRIRLEIKGFCKEWLIYKQELQTPYHCNRLILSGVNVVI----------- 109
           L C L      +   + KG       Y +ELQTP+HCNRLIL G +  I           
Sbjct: 662 LKC-LNEHEQWKDAAKDKGLLPAMDDYIKELQTPHHCNRLILPGTSGGIPDKVSCAECGQ 720

Query: 110 QMENFFMYRC 119
            ME F+MYRC
Sbjct: 721 TMEKFYMYRC 730


>Glyma04g36440.1 
          Length = 564

 Score = 48.1 bits (113), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 14/94 (14%)

Query: 37  DQGWAVASQGTTVQEGQHRAIEAHLLCALMNMTSGRIRLEIKGFCKEWLIYKQELQTPYH 96
           D+GWA+  +G T  E      ++ L+C L +    + R+E  G  +    Y  + + P+H
Sbjct: 471 DRGWAIFCRGAT--EMARAKGDSALIC-LQDFDKWKDRIEEDGVVQAMNDYLNKNKPPHH 527

Query: 97  CNRLILSGVNVVI-----------QMENFFMYRC 119
           CNRLIL G    I           QME +FMYRC
Sbjct: 528 CNRLILPGSTGGIPQKVVCAECGRQMEKYFMYRC 561