Miyakogusa Predicted Gene
- Lj0g3v0004279.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0004279.1 tr|G7LCG1|G7LCG1_MEDTR ATP-dependent RNA helicase
A-like protein OS=Medicago truncatula
GN=MTR_8g106,45.76,2e-19,Double-stranded RNA binding
motif,Double-stranded RNA-binding; DS_RBD,Double-stranded RNA-binding;
n,CUFF.273.1
(141 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma08g24630.1 276 4e-75
Glyma15g29910.1 275 9e-75
Glyma20g25800.1 108 2e-24
Glyma08g05480.1 104 3e-23
Glyma05g34180.1 104 4e-23
Glyma09g18490.1 103 6e-23
Glyma10g41440.1 87 4e-18
>Glyma08g24630.1
Length = 1220
Score = 276 bits (707), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 132/141 (93%), Positives = 135/141 (95%)
Query: 1 MLAVQELVSGDQCEGRFVFGRASRKPRASNDENKFTKDGTNPKSLLQTLLMRAGHSPPNY 60
MLAVQELVSGDQCEGRFVFGR SRKP+ASNDENKFTKDGTNPKSLLQTLLMRAGHSPP Y
Sbjct: 1080 MLAVQELVSGDQCEGRFVFGRESRKPKASNDENKFTKDGTNPKSLLQTLLMRAGHSPPKY 1139
Query: 61 KTKHLKTNEFRALVEFKGMQFVGKPKRNKQLAERDAAVEALAWLTHTSENAQHEDDKSPP 120
KTKHLKTNEFRALVEFKGMQFVGKPKRNKQLAERDAA+EALAWLTHTS+N QHEDDKSPP
Sbjct: 1140 KTKHLKTNEFRALVEFKGMQFVGKPKRNKQLAERDAAIEALAWLTHTSDNNQHEDDKSPP 1199
Query: 121 DVTDNMLKLLGKRNKSKRRSG 141
DVTDNMLKLLGKR KSKR G
Sbjct: 1200 DVTDNMLKLLGKRRKSKRGHG 1220
>Glyma15g29910.1
Length = 833
Score = 275 bits (704), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 130/141 (92%), Positives = 135/141 (95%)
Query: 1 MLAVQELVSGDQCEGRFVFGRASRKPRASNDENKFTKDGTNPKSLLQTLLMRAGHSPPNY 60
MLAVQELVSGDQCEGRFVFGR SRKP+ASNDENKFTKDGTNPKSLLQTLLMRAGHSPP Y
Sbjct: 693 MLAVQELVSGDQCEGRFVFGRESRKPKASNDENKFTKDGTNPKSLLQTLLMRAGHSPPKY 752
Query: 61 KTKHLKTNEFRALVEFKGMQFVGKPKRNKQLAERDAAVEALAWLTHTSENAQHEDDKSPP 120
KTKHLKTNEFRALVEFKGMQFVGKPKRNKQLAERDAA+EALAWLTHTS+N QHEDDKSPP
Sbjct: 753 KTKHLKTNEFRALVEFKGMQFVGKPKRNKQLAERDAAIEALAWLTHTSDNNQHEDDKSPP 812
Query: 121 DVTDNMLKLLGKRNKSKRRSG 141
D+TDNMLKLLGKR KSK+ G
Sbjct: 813 DITDNMLKLLGKRRKSKQGHG 833
>Glyma20g25800.1
Length = 1101
Score = 108 bits (269), Expect = 2e-24, Method: Composition-based stats.
Identities = 57/112 (50%), Positives = 70/112 (62%), Gaps = 10/112 (8%)
Query: 3 AVQELVSGDQCEGRFVFGRASRKPRASN----------DENKFTKDGTNPKSLLQTLLMR 52
AV+ L+S D+CEGRFVFGR KP + + G N KS LQTLL R
Sbjct: 964 AVRLLISNDKCEGRFVFGRQVLKPSKKSIVMASHPTLVSRTESGPGGDNSKSQLQTLLTR 1023
Query: 53 AGHSPPNYKTKHLKTNEFRALVEFKGMQFVGKPKRNKQLAERDAAVEALAWL 104
AG++ P Y TK LK N+F+A VEF GMQ +G+P NK+ AE+DAA EAL WL
Sbjct: 1024 AGYAAPIYMTKQLKNNQFQATVEFNGMQIMGQPCNNKKSAEKDAAAEALQWL 1075
>Glyma08g05480.1
Length = 1177
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 74/117 (63%), Gaps = 7/117 (5%)
Query: 3 AVQELVSGDQCEGRFVFGRASRKPRASNDENKFT---KDGTNPKSLLQTLLMRAGHSPPN 59
AV+ LVS D C+GRFVFGR P++ + N T +G N K+ LQ L RAGH P
Sbjct: 1039 AVRLLVSEDHCDGRFVFGRQVL-PQSKKETNSKTGGGAEGKNYKNHLQAFLNRAGHDSPT 1097
Query: 60 YKTKHLKTNEFRALVEFKGMQFVGKPKRNKQLAERDAAVEALAWLT---HTSENAQH 113
YKTK LK N+FR V F G+ FVG+P +K+LAE+ AA EAL W+ H+S++ H
Sbjct: 1098 YKTKELKNNQFRTTVVFNGLNFVGQPCSSKKLAEKSAAAEALLWIKGDGHSSDDIDH 1154
>Glyma05g34180.1
Length = 1180
Score = 104 bits (259), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 55/116 (47%), Positives = 74/116 (63%), Gaps = 5/116 (4%)
Query: 3 AVQELVSGDQCEGRFVFGRAS--RKPRASNDENKFTKDGTNPKSLLQTLLMRAGHSPPNY 60
AV+ LVS D C+GRFVFGR + + +N + + N K+ LQ L RAGH P Y
Sbjct: 1042 AVRLLVSEDHCDGRFVFGRQVLPQSKKETNSKTGGVAEEKNYKNHLQAFLNRAGHDSPTY 1101
Query: 61 KTKHLKTNEFRALVEFKGMQFVGKPKRNKQLAERDAAVEALAWL---THTSENAQH 113
KTK LK N+FR+ V F G+ FVG+P +K+LAE+ AA EAL WL +H+S++ H
Sbjct: 1102 KTKELKNNQFRSTVIFNGLNFVGQPCSSKKLAEKSAAAEALLWLKGDSHSSDDIDH 1157
>Glyma09g18490.1
Length = 801
Score = 103 bits (257), Expect = 6e-23, Method: Composition-based stats.
Identities = 60/141 (42%), Positives = 77/141 (54%), Gaps = 14/141 (9%)
Query: 1 MLAVQELVSGDQCEGRFVFGRASRKP------RASNDENKFTKDGTNPKSLLQTLLMRAG 54
+ A++ L+ D+CEGRFVF KP +AS G N KS LQTLL RAG
Sbjct: 666 LFAIRLLICNDKCEGRFVFSCQLLKPSMMALQQASVSRTDSGPGGDNSKSQLQTLLTRAG 725
Query: 55 HSPPNYKTKHLKTNEFRALVEFKGMQFVGKPKRNKQLAERDAAVEALAWLTHTSENAQHE 114
+ P Y TK LK N+F+A VEF G+Q +G+P NK+ AE+DAA EAL WL E +
Sbjct: 726 YGAPFYSTKQLKNNQFQATVEFNGVQIMGQPYINKKNAEKDAAAEALQWLMGRRETGNED 785
Query: 115 DDKSPPDVTDNMLKLLGKRNK 135
++M LL K K
Sbjct: 786 --------INHMTMLLKKSKK 798
>Glyma10g41440.1
Length = 318
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 66/114 (57%), Gaps = 13/114 (11%)
Query: 39 GTNPKSLLQTLLMRAGHSPPNYKTKHLKTNEFRALVEFKGMQFVGKPKRNKQLAERDAAV 98
G NPKS LQTLL RAG++ P Y TK LK N+F+A VEF GMQ +G+P NK+ E+DAA
Sbjct: 189 GDNPKSQLQTLLTRAGYAAPIYMTKQLKNNQFQATVEFNGMQIMGQPCNNKKSVEKDAAA 248
Query: 99 EALAWLTHTSENAQ---------HEDDKSPPDVTDNMLKLLGK----RNKSKRR 139
EAL WL + + H K + NM ++LGK RN+ +R
Sbjct: 249 EALQWLMGGKQTGRELKLKLEDAHSWLKQNKGSSVNMKQVLGKVAGERNRKLKR 302