Miyakogusa Predicted Gene

Lj0g3v0000089.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0000089.2 tr|G7JDV1|G7JDV1_MEDTR RING finger protein
OS=Medicago truncatula GN=MTR_4g080750 PE=4
SV=1,68.75,0.00000000000008, ,CUFF.43.2
         (64 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g42450.1                                                        80   5e-16
Glyma06g42690.1                                                        76   8e-15

>Glyma06g42450.1 
          Length = 262

 Score = 80.1 bits (196), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 46/62 (74%)

Query: 1  MSNFTPLPGRWRRGVRAYDAHTTNNSESNEVPVFYRSHSTRVNDERSSGVSDPLQWWEVR 60
          M+NFTPLPG W+RG R++D HT N+ ESNEVPVFYRSHST   D RSSGV    ++ + R
Sbjct: 5  MNNFTPLPGSWQRGFRSFDDHTFNHRESNEVPVFYRSHSTHATDGRSSGVLARERFSDFR 64

Query: 61 TP 62
           P
Sbjct: 65 NP 66


>Glyma06g42690.1 
          Length = 262

 Score = 75.9 bits (185), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 36/62 (58%), Positives = 45/62 (72%)

Query: 1  MSNFTPLPGRWRRGVRAYDAHTTNNSESNEVPVFYRSHSTRVNDERSSGVSDPLQWWEVR 60
          ++NFTPLPG W+RG R++D HT N+ ESNEVPVFY SHST   D RSSGV    ++ + R
Sbjct: 5  INNFTPLPGSWQRGFRSFDDHTFNHRESNEVPVFYGSHSTHATDGRSSGVLARQRFSDFR 64

Query: 61 TP 62
           P
Sbjct: 65 NP 66