Miyakogusa Predicted Gene

Lj0g3v0000089.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0000089.1 Non Chatacterized Hit- tr|E0CTW4|E0CTW4_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,41.22,2e-19,SUBFAMILY NOT NAMED,NULL; RING FINGER PROTEIN
24-RELATED,NULL; no description,Zinc finger, RING/FYVE,CUFF.43.1
         (157 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g42690.1                                                       156   9e-39
Glyma06g42450.1                                                       154   5e-38
Glyma12g15810.1                                                       135   1e-32
Glyma06g40200.1                                                        86   2e-17
Glyma17g32450.1                                                        67   5e-12

>Glyma06g42690.1 
          Length = 262

 Score =  156 bits (394), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 88/139 (63%), Positives = 98/139 (70%), Gaps = 15/139 (10%)

Query: 27  FPAQPHSRQQTNVPNGDIGRGFNPRLRQIFQQPHSRSTVQTSTQAPRVEENTKSTALSKL 86
           FPA P  RQQ +  N D+GR     LR+IF  P  RST QTSTQA  V E TKSTALSKL
Sbjct: 75  FPAPPPRRQQIHAHNEDMGR-----LREIFLHPPQRSTFQTSTQALPVVEITKSTALSKL 129

Query: 87  KKVIYNNNPTPKSLARRVSLYYRDNS-NALKKRVKEKDEDGKRC-------DPKEEVMLT 138
           KKV+Y+  P PK  ARRVSLYYR+N+   LK++ +E DED K C       DP EEVMLT
Sbjct: 130 KKVVYD--PPPKRYARRVSLYYRNNAAKPLKEKQRENDEDSKSCAICLEDFDPSEEVMLT 187

Query: 139 PCNHMFHEDCIVPWLTSKG 157
           PCNHMFHEDCIVPWLTSKG
Sbjct: 188 PCNHMFHEDCIVPWLTSKG 206


>Glyma06g42450.1 
          Length = 262

 Score =  154 bits (388), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 88/139 (63%), Positives = 96/139 (69%), Gaps = 15/139 (10%)

Query: 27  FPAQPHSRQQTNVPNGDIGRGFNPRLRQIFQQPHSRSTVQTSTQAPRVEENTKSTALSKL 86
           FPA P  RQQ +  N DIGR     LR+IF  P  RST QTSTQA  V E TKS ALSKL
Sbjct: 75  FPAPPPRRQQIHAHNEDIGR-----LREIFLHPPQRSTFQTSTQALPVVEITKSAALSKL 129

Query: 87  KKVIYNNNPTPKSLARRVSLYYRDNS-NALKKRVKEKDEDGKRC-------DPKEEVMLT 138
           KKV+Y+  P PK  ARRVSLYYR+N+   LK++  E DED K C       DP EEVMLT
Sbjct: 130 KKVVYD--PPPKRYARRVSLYYRNNAAKPLKEKQGENDEDRKSCAICLEDFDPSEEVMLT 187

Query: 139 PCNHMFHEDCIVPWLTSKG 157
           PCNHMFHEDCIVPWLTSKG
Sbjct: 188 PCNHMFHEDCIVPWLTSKG 206


>Glyma12g15810.1 
          Length = 188

 Score =  135 bits (341), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 86/139 (61%), Positives = 99/139 (71%), Gaps = 15/139 (10%)

Query: 27  FPAQPHSRQQTNVPNGDIGRGFNPRLRQIFQQPHSRSTVQTSTQAPRVEENTKSTALSKL 86
           FPA P  RQQ +V N D+ R     LR+IF QP  RST Q +TQAP   E +KSTALSKL
Sbjct: 1   FPAPPPRRQQIHVHNEDMRR-----LREIFLQPPQRSTFQINTQAPPPVEISKSTALSKL 55

Query: 87  KKVIYNNNPTPKSLARRVSLYYRDN-SNALKKRVKEKDEDGKRC-------DPKEEVMLT 138
           KKV+++  P PK  ARRVSLYYR+N +   K++ KEKDEDGK C       +P EEVMLT
Sbjct: 56  KKVVHD--PPPKRYARRVSLYYRNNVAKPWKEKEKEKDEDGKSCAICLEDFEPSEEVMLT 113

Query: 139 PCNHMFHEDCIVPWLTSKG 157
           PCNHMFHEDCIVPWLTSKG
Sbjct: 114 PCNHMFHEDCIVPWLTSKG 132


>Glyma06g40200.1 
          Length = 122

 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/99 (50%), Positives = 56/99 (56%), Gaps = 29/99 (29%)

Query: 59  PHSRSTVQTSTQAPRVEENTKSTALSKLKKVIYNNNPTPKSLARRVSLYYRDNSNALKKR 118
           P  R+  QT+TQAP   E +KSTA SKLKKV++  +P PK  ARR               
Sbjct: 1   PPQRAIFQTNTQAPSPVEISKSTASSKLKKVVH--DPPPKRYARR--------------- 43

Query: 119 VKEKDEDGKRCDPKEEVMLTPCNHMFHEDCIVPWLTSKG 157
                       P EEVMLTPCNHMFHEDCIVPWLTS G
Sbjct: 44  ------------PSEEVMLTPCNHMFHEDCIVPWLTSMG 70


>Glyma17g32450.1 
          Length = 52

 Score = 67.4 bits (163), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/42 (73%), Positives = 32/42 (76%), Gaps = 7/42 (16%)

Query: 123 DEDGKRC-------DPKEEVMLTPCNHMFHEDCIVPWLTSKG 157
           DEDGK C       +P EEVMLTPCNH FHEDCIVPWLTSKG
Sbjct: 1   DEDGKTCAICLEDFEPSEEVMLTPCNHTFHEDCIVPWLTSKG 42