Miyakogusa Predicted Gene

Lj6g3v2275260.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2275260.1 Non Characterized Hit- tr|F6I2C5|F6I2C5_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,45.9,8e-19,
,CUFF.61025.1
         (143 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g005740.2 | transmembrane protein, putative | HC | chr2:29...   218   1e-57
Medtr2g005740.1 | transmembrane protein, putative | HC | chr2:29...   202   9e-53
Medtr2g012780.1 | transmembrane protein, putative | HC | chr2:32...   102   1e-22
Medtr4g090440.1 | transmembrane protein, putative | HC | chr4:35...    91   4e-19

>Medtr2g005740.2 | transmembrane protein, putative | HC |
           chr2:293644-292533 | 20130731
          Length = 161

 Score =  218 bits (556), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 113/160 (70%), Positives = 120/160 (75%), Gaps = 17/160 (10%)

Query: 1   MSDLNSESSKAWNIYTASNPGPSQT------------GVDEEGPWNNFGTSMSAISLGFV 48
           MSDLNSE SK WN+YTASN GPS +            GVDEEGPW +FGTSMSAIS GFV
Sbjct: 1   MSDLNSERSKMWNVYTASNAGPSHSQTGGGGGGGGGGGVDEEGPWKSFGTSMSAISFGFV 60

Query: 49  ATAILISMFLIMAIFEHLFKPSQQFS-----MLRRYQENSVVPTRKQGNAQPASSPYAAS 103
           ATAILISMFLIMAIFEHLFKP+QQFS     ML  YQE+  +PT KQGNAQ   S   A 
Sbjct: 61  ATAILISMFLIMAIFEHLFKPTQQFSSTPESMLPTYQEHHSLPTTKQGNAQSVLSSSYAC 120

Query: 104 DFSVLMPGQQYPTYIAQPAPLPCPRERIYWPSHERQFVFN 143
           D SVLMPGQQYPTYIAQPAPLPCPRE  YWPSH+  FVFN
Sbjct: 121 DLSVLMPGQQYPTYIAQPAPLPCPREGAYWPSHQHHFVFN 160


>Medtr2g005740.1 | transmembrane protein, putative | HC |
           chr2:293284-292590 | 20130731
          Length = 151

 Score =  202 bits (514), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 104/149 (69%), Positives = 111/149 (74%), Gaps = 17/149 (11%)

Query: 12  WNIYTASNPGPSQT------------GVDEEGPWNNFGTSMSAISLGFVATAILISMFLI 59
           WN+YTASN GPS +            GVDEEGPW +FGTSMSAIS GFVATAILISMFLI
Sbjct: 2   WNVYTASNAGPSHSQTGGGGGGGGGGGVDEEGPWKSFGTSMSAISFGFVATAILISMFLI 61

Query: 60  MAIFEHLFKPSQQFS-----MLRRYQENSVVPTRKQGNAQPASSPYAASDFSVLMPGQQY 114
           MAIFEHLFKP+QQFS     ML  YQE+  +PT KQGNAQ   S   A D SVLMPGQQY
Sbjct: 62  MAIFEHLFKPTQQFSSTPESMLPTYQEHHSLPTTKQGNAQSVLSSSYACDLSVLMPGQQY 121

Query: 115 PTYIAQPAPLPCPRERIYWPSHERQFVFN 143
           PTYIAQPAPLPCPRE  YWPSH+  FVFN
Sbjct: 122 PTYIAQPAPLPCPREGAYWPSHQHHFVFN 150


>Medtr2g012780.1 | transmembrane protein, putative | HC |
           chr2:3286347-3283002 | 20130731
          Length = 171

 Score =  102 bits (254), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 63/99 (63%), Gaps = 2/99 (2%)

Query: 42  AISLGFVATAILISMFLIMAIFEHLFKPSQQ--FSMLRRYQENSVVPTRKQGNAQPASSP 99
           A+S GFVATA+LISMFL+MAIFE    PS Q  F  LRR +     P RK G+ Q     
Sbjct: 53  AVSFGFVATAVLISMFLLMAIFERFLAPSSQALFPNLRRNRRAVESPIRKLGHHQSPKMN 112

Query: 100 YAASDFSVLMPGQQYPTYIAQPAPLPCPRERIYWPSHER 138
              S  SVLMPG + PT+IA PAP+PC  ERI WPSH+ 
Sbjct: 113 IFTSWVSVLMPGDEIPTFIAHPAPIPCCPERISWPSHQH 151


>Medtr4g090440.1 | transmembrane protein, putative | HC |
           chr4:35836726-35840521 | 20130731
          Length = 149

 Score = 90.9 bits (224), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 55/125 (44%), Positives = 73/125 (58%), Gaps = 8/125 (6%)

Query: 20  PGPSQTGVDEEGPWNNFGTSMSAISLGFVATAILISMFLIMAIFEHLFKP-----SQQFS 74
           P  S   +  +  W NF +S++A+S GFVATAILISMFL+MAIFE   +P     S    
Sbjct: 12  PMASPLDLHRDEHWTNFDSSVNAVSFGFVATAILISMFLVMAIFERFLRPISPPMSPPGR 71

Query: 75  MLRRYQENSVVPTRKQGNAQPASSPYAASDFSVLMPGQQYPTYIAQPAPLPCPRERIYWP 134
             +R  E+ +    K  +  P  + Y +++ SVLMPG   PT+IA PAP  CP ERI WP
Sbjct: 72  RSQRDVESQMSSYGKLSHPSPKMTVY-STEVSVLMPGDVIPTFIAHPAPC-CP-ERIVWP 128

Query: 135 SHERQ 139
           SH+  
Sbjct: 129 SHQHN 133