Miyakogusa Predicted Gene

Lj6g3v2275090.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2275090.1 CUFF.61037.1
         (202 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g005820.1 | bromodomain protein | HC | chr2:325936-330633 ...   182   3e-46

>Medtr2g005820.1 | bromodomain protein | HC | chr2:325936-330633 |
           20130731
          Length = 591

 Score =  182 bits (461), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 104/195 (53%), Positives = 112/195 (57%), Gaps = 5/195 (2%)

Query: 1   MLVESPGGEDSSSNTDESLGSDGDAGVDKGEVAKMEISEKQRSPSEGKHETXX-----XX 55
           MLVESPGGEDS SNTDE LG+DGD   DKGEV KME SEK  SPS+G+HE          
Sbjct: 388 MLVESPGGEDSLSNTDELLGTDGDVDDDKGEVTKMETSEKNCSPSDGRHEVNEVDDDGME 447

Query: 56  XXXXXXXXXXXXXXXXXXXXXXXXIEMDSQKREMDDTLKHGGTLAEKSNVGDATVLHDEY 115
                                   IEM+  KR MD+TL+HGGTLAE+S VGD   LHDEY
Sbjct: 448 EENHGPEDVEEDEEEDGEGENEEEIEMNRVKRRMDETLRHGGTLAEESEVGDTAALHDEY 507

Query: 116 KTMXXXXXXXXXXXXXXXXXXXXXXXXAKLLESLCVENPKLSSLCGILFPNNSQSVWSGP 175
           K                          AKLLESLC ENP LSSLCG LFP NSQSVWSGP
Sbjct: 508 KNTQQEGQAAVVQQQKKHKEPQDKHQKAKLLESLCSENPMLSSLCGTLFPKNSQSVWSGP 567

Query: 176 HSLLHQRNSACASSI 190
           HSL+HQR SA  SSI
Sbjct: 568 HSLIHQRKSARTSSI 582