Miyakogusa Predicted Gene

Lj6g3v2274990.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2274990.1 Non Characterized Hit- tr|B6SZH9|B6SZH9_MAIZE
Putative uncharacterized protein OS=Zea mays PE=2
SV=1,32.29,1e-18,coiled-coil,NULL; seg,NULL,CUFF.61009.1
         (276 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g005910.1 | hypothetical protein | HC | chr2:387925-389011...   191   7e-49

>Medtr2g005910.1 | hypothetical protein | HC | chr2:387925-389011 |
           20130731
          Length = 238

 Score =  191 bits (485), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 140/293 (47%), Positives = 159/293 (54%), Gaps = 72/293 (24%)

Query: 1   MEPQPISETPPLDHTSTVDTSRPFTSVKEAVAIFGERLLVGEIYSPKP----FSDTPYSP 56
           ME +P+S TP  D++STVDTSRPF+SVKEAVAIFGERLLVGEIYSP P    FSDT    
Sbjct: 1   MEHEPMSVTPTADYSSTVDTSRPFSSVKEAVAIFGERLLVGEIYSPSPKPFSFSDT---- 56

Query: 57  IIKREPSWRFSSPSPNYPIKPKEENNVNALSDTAFSPPVKREPSWRFSSPSPIKPK---- 112
                     SS +P Y                + S  +KREPSWR    SP        
Sbjct: 57  ----------SSTAPYY----------------SPSVTIKREPSWRSMPSSPSPISPIKP 90

Query: 113 --EENNENALFDTXXXXXXXXXXXXXXXXMLKERGSETEVALATLNAELHKNMSKLXXXX 170
             +E  EN +FDT                MLKERGSETEVALAT+NAELHKNMSKL    
Sbjct: 91  PFKEEEENNIFDTIKKLEAELEKTKTELKMLKERGSETEVALATMNAELHKNMSKL---A 147

Query: 171 XXXXXXXXXXXTKTVRFEIERENGEKELNMIXXXXXXXXXXXXXXXXXXXTETLAKILSL 230
                       KTVRFE   +  EK +                      ++TLA I+SL
Sbjct: 148 QAEAAAAGKAAAKTVRFENISDGSEKMMR--------------------NSQTLAHIISL 187

Query: 231 GENDHLFGGKKVR------KQKPIIPLVGDFFFKRKSSSTTNHH-NPLYASPF 276
           GENDH+FGG K R      KQKPIIPL+ DFFFKRK+S  TNHH NPLYASPF
Sbjct: 188 GENDHIFGGGKKRHNNKSTKQKPIIPLLSDFFFKRKNS--TNHHNNPLYASPF 238