Miyakogusa Predicted Gene
- Lj6g3v2274980.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v2274980.1 Non Characterized Hit- tr|Q2PEP5|Q2PEP5_TRIPR
Putative WD-40 repeat protein (Fragment) OS=Trifolium
,78.76,0,BOP1NT,BOP1, N-terminal domain; WD40,WD40 repeat;
WD_REPEATS_1,WD40 repeat, conserved site; RIBOSOME,CUFF.61011.1
(722 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr2g006020.1 | transducin/WD40 repeat protein | HC | chr2:424... 1083 0.0
Medtr2g006020.2 | transducin/WD40 repeat protein | HC | chr2:424... 744 0.0
Medtr2g016690.1 | transducin/WD-like repeat-protein | HC | chr2:... 57 1e-07
Medtr8g100005.3 | transducin/WD40 repeat protein | HC | chr8:423... 52 3e-06
Medtr8g100005.1 | transducin/WD40 repeat protein | HC | chr8:423... 51 4e-06
Medtr8g100005.2 | transducin/WD40 repeat protein | HC | chr8:423... 51 4e-06
>Medtr2g006020.1 | transducin/WD40 repeat protein | HC |
chr2:424334-417314 | 20130731
Length = 788
Score = 1083 bits (2801), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 525/669 (78%), Positives = 583/669 (87%), Gaps = 43/669 (6%)
Query: 97 GGDESDSSEDEVAPRNTVGDVPLQWYEDEPHIGYDNTGKKIKKREKQDKLDSFLANIDDS 156
GG ESDSSEDEVAPRNT+G+VPL+WYEDEPHIGYD GKKIKK+E++DKL SFLAN+DDS
Sbjct: 120 GGAESDSSEDEVAPRNTIGEVPLKWYEDEPHIGYDIKGKKIKKKEREDKLGSFLANVDDS 179
Query: 157 KHWQKIVDEYNDEVVELTKEEIKIVRRLLKSRAPHSDFDPNPDYVDWFKWDDANHPISNA 216
K+W+K+ DEYNDE V LTK+EIK+VR+L++++APHSDFDP+PDYVDWFKWDDA HP+SNA
Sbjct: 180 KNWRKVFDEYNDEEVVLTKDEIKMVRKLMQNKAPHSDFDPHPDYVDWFKWDDAKHPLSNA 239
Query: 217 PEPKRRFIPSKWEAKKVVQYVRAIRKGLITFDKPKEEDGPYLLWEDDSGLTEKANHLAYI 276
PEPKRRFIPSKWEAKKVVQYVR IR G ITFDKPK+ED YLLWEDDSGLTEKANHLAYI
Sbjct: 240 PEPKRRFIPSKWEAKKVVQYVRGIRNGTITFDKPKKEDDSYLLWEDDSGLTEKANHLAYI 299
Query: 277 PAPKQKFPGHDESYNPPLEYIPTQEELNSYQLMPEDDRPKFIPKRFTSIRSIPAYENAMT 336
PAPKQK PGHDESYNPPLEYIPTQEE+NSYQLM E+DRPKFIP+RFTS+RSIPAYENAM
Sbjct: 300 PAPKQKLPGHDESYNPPLEYIPTQEEINSYQLMYEEDRPKFIPQRFTSMRSIPAYENAMK 359
Query: 337 ECFERCMDLYLCPRVRKKRIQIDPEALKPKLPNRKELKPYPITCYIEYKGHEDAVTSISV 396
E FERC+DLYLCPRVR+KR+ IDPE+LKPKLPN+KELKPYPITCYIEYKGHE AVTSIS+
Sbjct: 360 ESFERCLDLYLCPRVRRKRLNIDPESLKPKLPNKKELKPYPITCYIEYKGHEGAVTSISI 419
Query: 397 ESSGQWMASGSSDGTVRVWEVETGRCLRRWEVGEAVNCVAWNPLPDIHILAVSVGQDVLL 456
E+SGQWMASGSSDGTVRVWEVETGRCLR+WE+GEAVNCV WNPL DIHI+AVS G DVLL
Sbjct: 420 EASGQWMASGSSDGTVRVWEVETGRCLRQWEIGEAVNCVTWNPLSDIHIVAVSAGHDVLL 479
Query: 457 LNTCVGDEEEQKRINELLWVDSSIASHDSGKQSPSVSWLRDDKHAGIRLKHIKTVTSVEW 516
LNT +GDEEEQ+RI ELL +DS AS ++GK++PSV WL+DDKH GIRL+H+K VTSVEW
Sbjct: 480 LNTGLGDEEEQQRIKELLLIDSPEASDETGKKAPSVRWLKDDKHDGIRLRHLKNVTSVEW 539
Query: 517 HRRGDYFSTVMPA-------------------------------------------GESR 533
HR+GDYFSTVMP+ ESR
Sbjct: 540 HRKGDYFSTVMPSLCLSTWHESSLTFDTFNDLLSSELLSSCDPPHFIFNVSLTYSLRESR 599
Query: 534 SVLIHQLSKKVTQKLPFKLSELVVGSTFHPSLSIFFVCTKRIVRVYDLVKSKRLKKLYTG 593
SVLIHQLSKK++QKLPFKL L V STFHPS SIFF+CTK+ VRV+DL+KSK++KKL TG
Sbjct: 600 SVLIHQLSKKLSQKLPFKLHGLAVRSTFHPSRSIFFICTKKTVRVFDLLKSKQIKKLDTG 659
Query: 594 LSEASSIAVHPGGDNLIVGSKEGKMCWFDMDLSSKPYKTLKCHPKDINNVVFHRSYPLFA 653
L EASSIAVHPGGDNLIVGSKEGK+CWFDMDLSSKPYK LKCHPKDINNVVFHRSYPLFA
Sbjct: 660 LKEASSIAVHPGGDNLIVGSKEGKLCWFDMDLSSKPYKVLKCHPKDINNVVFHRSYPLFA 719
Query: 654 SCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTNSNGRGILDCKFHPRQPWLFTAGAD 713
SCSDDCTAYVFHGMVYSDLN+NPLIVPLEILRGH NSNGRGILDCKFHPRQPWLFTAGAD
Sbjct: 720 SCSDDCTAYVFHGMVYSDLNKNPLIVPLEILRGHANSNGRGILDCKFHPRQPWLFTAGAD 779
Query: 714 KLIKVYCHQ 722
K+IK+YCHQ
Sbjct: 780 KMIKLYCHQ 788
>Medtr2g006020.2 | transducin/WD40 repeat protein | HC |
chr2:424360-419029 | 20130731
Length = 556
Score = 744 bits (1920), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/433 (82%), Positives = 401/433 (92%)
Query: 97 GGDESDSSEDEVAPRNTVGDVPLQWYEDEPHIGYDNTGKKIKKREKQDKLDSFLANIDDS 156
GG ESDSSEDEVAPRNT+G+VPL+WYEDEPHIGYD GKKIKK+E++DKL SFLAN+DDS
Sbjct: 120 GGAESDSSEDEVAPRNTIGEVPLKWYEDEPHIGYDIKGKKIKKKEREDKLGSFLANVDDS 179
Query: 157 KHWQKIVDEYNDEVVELTKEEIKIVRRLLKSRAPHSDFDPNPDYVDWFKWDDANHPISNA 216
K+W+K+ DEYNDE V LTK+EIK+VR+L++++APHSDFDP+PDYVDWFKWDDA HP+SNA
Sbjct: 180 KNWRKVFDEYNDEEVVLTKDEIKMVRKLMQNKAPHSDFDPHPDYVDWFKWDDAKHPLSNA 239
Query: 217 PEPKRRFIPSKWEAKKVVQYVRAIRKGLITFDKPKEEDGPYLLWEDDSGLTEKANHLAYI 276
PEPKRRFIPSKWEAKKVVQYVR IR G ITFDKPK+ED YLLWEDDSGLTEKANHLAYI
Sbjct: 240 PEPKRRFIPSKWEAKKVVQYVRGIRNGTITFDKPKKEDDSYLLWEDDSGLTEKANHLAYI 299
Query: 277 PAPKQKFPGHDESYNPPLEYIPTQEELNSYQLMPEDDRPKFIPKRFTSIRSIPAYENAMT 336
PAPKQK PGHDESYNPPLEYIPTQEE+NSYQLM E+DRPKFIP+RFTS+RSIPAYENAM
Sbjct: 300 PAPKQKLPGHDESYNPPLEYIPTQEEINSYQLMYEEDRPKFIPQRFTSMRSIPAYENAMK 359
Query: 337 ECFERCMDLYLCPRVRKKRIQIDPEALKPKLPNRKELKPYPITCYIEYKGHEDAVTSISV 396
E FERC+DLYLCPRVR+KR+ IDPE+LKPKLPN+KELKPYPITCYIEYKGHE AVTSIS+
Sbjct: 360 ESFERCLDLYLCPRVRRKRLNIDPESLKPKLPNKKELKPYPITCYIEYKGHEGAVTSISI 419
Query: 397 ESSGQWMASGSSDGTVRVWEVETGRCLRRWEVGEAVNCVAWNPLPDIHILAVSVGQDVLL 456
E+SGQWMASGSSDGTVRVWEVETGRCLR+WE+GEAVNCV WNPL DIHI+AVS G DVLL
Sbjct: 420 EASGQWMASGSSDGTVRVWEVETGRCLRQWEIGEAVNCVTWNPLSDIHIVAVSAGHDVLL 479
Query: 457 LNTCVGDEEEQKRINELLWVDSSIASHDSGKQSPSVSWLRDDKHAGIRLKHIKTVTSVEW 516
LNT +GDEEEQ+RI ELL +DS AS ++GK++PSV WL+DDKH GIRL+H+K VTSVEW
Sbjct: 480 LNTGLGDEEEQQRIKELLLIDSPEASDETGKKAPSVRWLKDDKHDGIRLRHLKNVTSVEW 539
Query: 517 HRRGDYFSTVMPA 529
HR+GDYFSTVMPA
Sbjct: 540 HRKGDYFSTVMPA 552
>Medtr2g016690.1 | transducin/WD-like repeat-protein | HC |
chr2:5155282-5150008 | 20130731
Length = 331
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 11/107 (10%)
Query: 341 RCMDLYLCPRVRKKRIQIDPE------ALKP--KLPNRKELKPYPITCYIEYKGHEDAVT 392
RC P + R++I P+ A P +L + P P+ + Y GH V
Sbjct: 41 RCYRTIQYPDSQVNRLEITPDKRYLAAAGNPHIRLFDVNSNSPQPV---MSYDGHTSNVM 97
Query: 393 SISVESSGQWMASGSSDGTVRVWEVETGRCLRRWEVGEAVNCVAWNP 439
++ + G WM SGS DGTV++W++ C R +E AVN V +P
Sbjct: 98 AVGFQCDGNWMYSGSEDGTVKIWDLRAPGCQREYESRAAVNTVVLHP 144
>Medtr8g100005.3 | transducin/WD40 repeat protein | HC |
chr8:42372817-42370425 | 20130731
Length = 500
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 383 EYKGHEDAVTSISVESSGQWMASGSSDGTVRVWEVETGRCLRRWEVGEAVNCVAWNPLPD 442
E++GH D + ++ SG ++ S S D TVR+W+V +CLR + V CV +NP+ D
Sbjct: 367 EFQGHSDDILDLAWSKSG-FLLSSSVDKTVRLWQVGISKCLRVFSHNNYVTCVNFNPVND 425
Query: 443 IHILAVSV 450
++ S+
Sbjct: 426 NFFISGSI 433
>Medtr8g100005.1 | transducin/WD40 repeat protein | HC |
chr8:42372817-42368175 | 20130731
Length = 714
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 383 EYKGHEDAVTSISVESSGQWMASGSSDGTVRVWEVETGRCLRRWEVGEAVNCVAWNPLPD 442
E++GH D + ++ SG ++ S S D TVR+W+V +CLR + V CV +NP+ D
Sbjct: 367 EFQGHSDDILDLAWSKSG-FLLSSSVDKTVRLWQVGISKCLRVFSHNNYVTCVNFNPVND 425
Query: 443 IHILAVSV 450
++ S+
Sbjct: 426 NFFISGSI 433
>Medtr8g100005.2 | transducin/WD40 repeat protein | HC |
chr8:42372817-42368175 | 20130731
Length = 714
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 383 EYKGHEDAVTSISVESSGQWMASGSSDGTVRVWEVETGRCLRRWEVGEAVNCVAWNPLPD 442
E++GH D + ++ SG ++ S S D TVR+W+V +CLR + V CV +NP+ D
Sbjct: 367 EFQGHSDDILDLAWSKSG-FLLSSSVDKTVRLWQVGISKCLRVFSHNNYVTCVNFNPVND 425
Query: 443 IHILAVSV 450
++ S+
Sbjct: 426 NFFISGSI 433