Miyakogusa Predicted Gene

Lj6g3v2274960.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2274960.1 CUFF.61006.1
         (330 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g006100.1 | etoposide-induced protein | HC | chr2:449580-4...   549   e-156

>Medtr2g006100.1 | etoposide-induced protein | HC |
           chr2:449580-456771 | 20130731
          Length = 332

 Score =  549 bits (1414), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 265/324 (81%), Positives = 288/324 (88%), Gaps = 1/324 (0%)

Query: 8   KAACFLWLEGFREACCLHRVLILCLRSRRLLVRTGQCFLLNGFIFLGSIFVLSSVVIPAL 67
           K+   LWLEG REACCLHRV+ILCLRS+ L++RTGQCFLLNGFIFLGSIFVL+SVVIPAL
Sbjct: 9   KSGGILWLEGLREACCLHRVIILCLRSKPLMLRTGQCFLLNGFIFLGSIFVLNSVVIPAL 68

Query: 68  WWILPDQCSQFVSHKLCDSDGTLKFYYFLRLLLIQLFYVLWFYPLYVFSIILSTIWYNDI 127
           WWILPDQCSQ VSHKLC   GTLKFY FLRL+LIQLFY LWFYPLYVFSI+LST+WYNDI
Sbjct: 69  WWILPDQCSQLVSHKLCALAGTLKFYSFLRLVLIQLFYALWFYPLYVFSIVLSTLWYNDI 128

Query: 128 AKYGYAAMGRSNFTEKKGSSQNSP-TIQNAHHAKKPSGLGGVMIGIGEQVXXXXXXXXXX 186
           AKYGYAAMGRS FT    S QN+  T+QNA+ AK+PSGLGGVMIGIGEQV          
Sbjct: 129 AKYGYAAMGRSKFTVDNSSGQNNTVTMQNAYQAKRPSGLGGVMIGIGEQVYSILLLSVFF 188

Query: 187 XXXXATGFIPYIGKVLNFLLLSWMYAYYCFEYKWNFNEVALDRRLDYFESFWPFFAGFGS 246
               ATGFIPYIGKVLNFLLLSWMYAYYCFEYKWNFNEVALDRRLDYFES+WPFFAGFGS
Sbjct: 189 LEVYATGFIPYIGKVLNFLLLSWMYAYYCFEYKWNFNEVALDRRLDYFESYWPFFAGFGS 248

Query: 247 PCVLAIFFFSPLVSYGIMAILFPLFVLTATGSEAEQQISLDKTKWRAAGVERLPIFYVAN 306
           PCVLAIFFFSPLVSYGIMAIL+PLFVLTATGSEAEQ+IS +K KWRAAGVERLPIFYVA+
Sbjct: 249 PCVLAIFFFSPLVSYGIMAILYPLFVLTATGSEAEQEISFEKNKWRAAGVERLPIFYVAD 308

Query: 307 NVSLWMLSLLPLEKRDQMQDKKAQ 330
           NVS+W+LSLLPLEKRD+MQD+KA+
Sbjct: 309 NVSMWILSLLPLEKRDRMQDRKAK 332