Miyakogusa Predicted Gene

Lj6g3v2259900.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2259900.1 Non Characterized Hit- tr|A9PJV9|A9PJV9_9ROSI
Putative uncharacterized protein OS=Populus
trichocarp,45.08,0.00000000000002,coiled-coil,NULL;
seg,NULL,CUFF.61000.1
         (115 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g007690.2 | XS domain protein/XS zinc finger protein | HC ...    60   3e-10
Medtr2g007690.1 | XS domain protein/XS zinc finger protein | HC ...    60   3e-10

>Medtr2g007690.2 | XS domain protein/XS zinc finger protein | HC |
           chr2:1079146-1083122 | 20130731
          Length = 629

 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/124 (37%), Positives = 61/124 (49%), Gaps = 13/124 (10%)

Query: 1   MDAQEKFFLDXXXXXXXARKAKEEEFEKLQEAQLEEGNWVYGDSSEKEEDKKIME----- 55
           M+ QEKFFLD       +  AKE+EF K Q+A+ +E   V GDSS KE+D  IME     
Sbjct: 506 MNEQEKFFLDQIQIIHQSIAAKEDEFTKSQQAK-QEVMCVNGDSSVKEDDNHIMEKNSSF 564

Query: 56  -------MREFEEGRFNVIKIHDDKKKAXXXXXXXXXXXXXXXXXXXXVQLMDKFSSGQT 108
                  MR+FE  R N++K H +K+ A                     QLM+K +   +
Sbjct: 565 TKSQDKDMRQFEAVRDNILKTHGEKQLALKKKQWQEQVELEKELENELTQLMNKHALSHS 624

Query: 109 QEES 112
           QEES
Sbjct: 625 QEES 628


>Medtr2g007690.1 | XS domain protein/XS zinc finger protein | HC |
           chr2:1079146-1083118 | 20130731
          Length = 629

 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/124 (37%), Positives = 61/124 (49%), Gaps = 13/124 (10%)

Query: 1   MDAQEKFFLDXXXXXXXARKAKEEEFEKLQEAQLEEGNWVYGDSSEKEEDKKIME----- 55
           M+ QEKFFLD       +  AKE+EF K Q+A+ +E   V GDSS KE+D  IME     
Sbjct: 506 MNEQEKFFLDQIQIIHQSIAAKEDEFTKSQQAK-QEVMCVNGDSSVKEDDNHIMEKNSSF 564

Query: 56  -------MREFEEGRFNVIKIHDDKKKAXXXXXXXXXXXXXXXXXXXXVQLMDKFSSGQT 108
                  MR+FE  R N++K H +K+ A                     QLM+K +   +
Sbjct: 565 TKSQDKDMRQFEAVRDNILKTHGEKQLALKKKQWQEQVELEKELENELTQLMNKHALSHS 624

Query: 109 QEES 112
           QEES
Sbjct: 625 QEES 628