Miyakogusa Predicted Gene

Lj6g3v2257830.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2257830.1 tr|B9HV48|B9HV48_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_566242 PE=4
SV=1,27.75,0.000000003,seg,NULL; XS,XS domain; TRANSCRIPTION FACTOR
X1-LIKE,NULL; RIBONUCLEASE P PROTEIN SUBUNIT P38-RELATE,CUFF.60995.1
         (475 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g007690.2 | XS domain protein/XS zinc finger protein | HC ...   390   e-108
Medtr2g007690.1 | XS domain protein/XS zinc finger protein | HC ...   390   e-108
Medtr3g098240.1 | suppressor OF protein silencing protein | HC |...   319   4e-87
Medtr3g098260.1 | suppressor OF protein silencing protein | HC |...   309   3e-84

>Medtr2g007690.2 | XS domain protein/XS zinc finger protein | HC |
           chr2:1079146-1083122 | 20130731
          Length = 629

 Score =  390 bits (1003), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/332 (58%), Positives = 233/332 (70%), Gaps = 60/332 (18%)

Query: 146 GVKGHEGAKKNKWCRDFFGRLDKVASQVEKLDSPSIRWHCPICRGGPGAIDWYHGLQPLY 205
           G K HEG+KK+KW R FF  L+K+   VE++ SP+ RWHCP C+ GPGAIDWYHGLQPL 
Sbjct: 220 GEKSHEGSKKSKWFRKFFNDLNKLT--VEEISSPATRWHCPACQDGPGAIDWYHGLQPLL 277

Query: 206 VHAMTIQVRFAIVHRLFADTLKEECRRRGAPLTS--EASGLWEGLDKKLKDHEIVWPPMV 263
            H+ TI+VR A +HR F++TL+EEC  RGAPL    EA+GLWEGLD K+KD EIVWPPMV
Sbjct: 278 NHSRTIKVRRARLHRAFSETLEEECSMRGAPLIRGGEANGLWEGLDNKVKDREIVWPPMV 337

Query: 264 IIMNTKSQRGENNKVQQYSCLVFIRVFVFCYFALCFSYAKFFELQWTGMGNQELLDSFSD 323
           +IMNTK ++ ENNK                               WTGMGNQELLD FSD
Sbjct: 338 VIMNTKYEQDENNK-------------------------------WTGMGNQELLDCFSD 366

Query: 324 YAAMKARHSYGPQGHRGMSVLIFAETPAGYLEAMRLHKHFKEQGRDKEAWGRCRNPYVPG 383
           Y A+KARHSYGP GHRGMSVLIF  + AGYLE+++L+KHFKEQGRD+EAW RC+NP+VPG
Sbjct: 367 YGALKARHSYGPHGHRGMSVLIFEPSVAGYLESVQLYKHFKEQGRDREAWDRCKNPFVPG 426

Query: 384 GRRQLYGYLASGEDLENFNQHSGKTKLKYELKSYQETVESKIKHINDDIQQLDYFKDKAA 443
           G+RQLYGY+AS EDL+ FN+HSGK+KLK+E++SYQE VESKIKHINDD            
Sbjct: 427 GKRQLYGYMASREDLDVFNKHSGKSKLKFEIRSYQEMVESKIKHINDD------------ 474

Query: 444 KEQFKSEVYANTLSKVTDKLRQAKLENRVVRE 475
                        SKV++KLR+   EN VV+E
Sbjct: 475 -------------SKVSEKLRKTTEENHVVQE 493


>Medtr2g007690.1 | XS domain protein/XS zinc finger protein | HC |
           chr2:1079146-1083118 | 20130731
          Length = 629

 Score =  390 bits (1003), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/332 (58%), Positives = 233/332 (70%), Gaps = 60/332 (18%)

Query: 146 GVKGHEGAKKNKWCRDFFGRLDKVASQVEKLDSPSIRWHCPICRGGPGAIDWYHGLQPLY 205
           G K HEG+KK+KW R FF  L+K+   VE++ SP+ RWHCP C+ GPGAIDWYHGLQPL 
Sbjct: 220 GEKSHEGSKKSKWFRKFFNDLNKLT--VEEISSPATRWHCPACQDGPGAIDWYHGLQPLL 277

Query: 206 VHAMTIQVRFAIVHRLFADTLKEECRRRGAPLTS--EASGLWEGLDKKLKDHEIVWPPMV 263
            H+ TI+VR A +HR F++TL+EEC  RGAPL    EA+GLWEGLD K+KD EIVWPPMV
Sbjct: 278 NHSRTIKVRRARLHRAFSETLEEECSMRGAPLIRGGEANGLWEGLDNKVKDREIVWPPMV 337

Query: 264 IIMNTKSQRGENNKVQQYSCLVFIRVFVFCYFALCFSYAKFFELQWTGMGNQELLDSFSD 323
           +IMNTK ++ ENNK                               WTGMGNQELLD FSD
Sbjct: 338 VIMNTKYEQDENNK-------------------------------WTGMGNQELLDCFSD 366

Query: 324 YAAMKARHSYGPQGHRGMSVLIFAETPAGYLEAMRLHKHFKEQGRDKEAWGRCRNPYVPG 383
           Y A+KARHSYGP GHRGMSVLIF  + AGYLE+++L+KHFKEQGRD+EAW RC+NP+VPG
Sbjct: 367 YGALKARHSYGPHGHRGMSVLIFEPSVAGYLESVQLYKHFKEQGRDREAWDRCKNPFVPG 426

Query: 384 GRRQLYGYLASGEDLENFNQHSGKTKLKYELKSYQETVESKIKHINDDIQQLDYFKDKAA 443
           G+RQLYGY+AS EDL+ FN+HSGK+KLK+E++SYQE VESKIKHINDD            
Sbjct: 427 GKRQLYGYMASREDLDVFNKHSGKSKLKFEIRSYQEMVESKIKHINDD------------ 474

Query: 444 KEQFKSEVYANTLSKVTDKLRQAKLENRVVRE 475
                        SKV++KLR+   EN VV+E
Sbjct: 475 -------------SKVSEKLRKTTEENHVVQE 493


>Medtr3g098240.1 | suppressor OF protein silencing protein | HC |
           chr3:44840494-44835486 | 20130731
          Length = 759

 Score =  319 bits (817), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 167/333 (50%), Positives = 210/333 (63%), Gaps = 39/333 (11%)

Query: 148 KGHEGAKKNKWCRDFFGRLDKVASQVEKLDSPSIRWHCPICRGGPGAIDWYHGLQPLYVH 207
           K HE  KK+KW R FF  LDK+   +E+++ P   WHCP C+ GPG+IDWY GL PL  H
Sbjct: 208 KSHETRKKSKWFRKFFEYLDKMT--IEQINEPEREWHCPACQSGPGSIDWYSGLLPLMNH 265

Query: 208 AMTIQVRFAIVHRLFADTLKEECRRRGAPLTS--EASGLWEGLDKKLKDHEIVWPPMVII 265
           A T   +   VHR  A  L EE RRRG  +    E+ G W+GL ++ KDHEIVWPPMVII
Sbjct: 266 AKTKGSKRVKVHRELAVLLDEELRRRGGTVVPAGESFGKWKGLKEEEKDHEIVWPPMVII 325

Query: 266 MNTKSQRGENNKVQQYSCLVFIRVFVFCYFALCFSYAKFFELQWTGMGNQELLDSFSDYA 325
            NTK +  ENNK                               WTGMGNQELLD FS YA
Sbjct: 326 QNTKLEEDENNK-------------------------------WTGMGNQELLDYFSSYA 354

Query: 326 AMKARHSYGPQGHRGMSVLIFAETPAGYLEAMRLHKHFKEQGRDKEAW---GRCRNPYVP 382
           A++ARHSYGP GHRGMSVL+F  + +GYLEA RLHKHF +QG ++E W    R  N ++P
Sbjct: 355 AVRARHSYGPNGHRGMSVLMFEASASGYLEAERLHKHFTDQGTNRETWFSNHRSSNLFLP 414

Query: 383 GGRRQLYGYLASGEDLENFNQH-SGKTKLKYELKSYQETVESKIKHINDDIQQLDYFKDK 441
           GG RQL+GY+A+ +DLE FN+H  GK +LKYE+KSYQE V  +I+ +++D QQL Y K+K
Sbjct: 415 GGNRQLFGYMAAKDDLEFFNRHCQGKPRLKYEMKSYQEMVVHQIRQMSEDNQQLLYLKNK 474

Query: 442 AAKEQFKSEVYANTLSKVTDKLRQAKLENRVVR 474
             KE   S+    +   VT+KLR+   ENR+VR
Sbjct: 475 MVKEMQHSKALEESFGIVTEKLRKTMEENRIVR 507


>Medtr3g098260.1 | suppressor OF protein silencing protein | HC |
           chr3:44852260-44848884 | 20130731
          Length = 644

 Score =  309 bits (792), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 158/308 (51%), Positives = 202/308 (65%), Gaps = 37/308 (12%)

Query: 173 VEKLDSPSIRWHCPICRGGPGAIDWYHGLQPLYVHAMTIQVRFAIVHRLFADTLKEECRR 232
           +++++ P  +WHCP C+GGPGAIDWY GLQPL  HA T   +   VHR  A  L EE RR
Sbjct: 234 IDQINEPERQWHCPACQGGPGAIDWYRGLQPLMNHAKTKGSKRVKVHRELAVLLDEELRR 293

Query: 233 RGAPLT--SEASGLWEGLDKKLKDHEIVWPPMVIIMNTKSQRGENNKVQQYSCLVFIRVF 290
           RG  +    EA G W+GL ++ KDHEIVWPPMV+I NT+ ++ EN+K             
Sbjct: 294 RGTTVVPAGEAFGKWKGLKEEEKDHEIVWPPMVMIQNTQLEQDENDK------------- 340

Query: 291 VFCYFALCFSYAKFFELQWTGMGNQELLDSFSDYAAMKARHSYGPQGHRGMSVLIFAETP 350
                             WTGMGNQELLD FS YAA++ARHSYGPQGHRGMSVL+F  + 
Sbjct: 341 ------------------WTGMGNQELLDYFSSYAAVRARHSYGPQGHRGMSVLMFEASA 382

Query: 351 AGYLEAMRLHKHFKEQGRDKEAWGRCR---NPYVPGGRRQLYGYLASGEDLENFNQH-SG 406
           +G+LEA RL KHF EQG ++EAW   R   N ++PGG RQL+GY+A+ EDLE FN+H  G
Sbjct: 383 SGFLEAERLDKHFAEQGTNREAWFSNRRRYNLFLPGGNRQLFGYMATKEDLEAFNRHCQG 442

Query: 407 KTKLKYELKSYQETVESKIKHINDDIQQLDYFKDKAAKEQFKSEVYANTLSKVTDKLRQA 466
           KT+LKYEL+SYQE V  +I+ +N+D QQL Y K+K  KE+  S+    +   VT+KLR+ 
Sbjct: 443 KTRLKYELRSYQEMVVHQIRQMNEDNQQLLYLKNKMVKEKKHSKALEESFGIVTEKLRKT 502

Query: 467 KLENRVVR 474
             ENR+VR
Sbjct: 503 MEENRIVR 510