Miyakogusa Predicted Gene

Lj6g3v2257810.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2257810.1 tr|B9GZQ9|B9GZQ9_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_712240 PE=4
SV=1,56.84,2e-18,SUBFAMILY NOT NAMED,NULL; PYM PROTEIN,NULL;
Mago-bind,Exon junction complex, Pym; Pym (Within the bg,CUFF.60934.1
         (217 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g007770.1 | partner of Y14-mago protein, putative | HC | c...   234   3e-62

>Medtr2g007770.1 | partner of Y14-mago protein, putative | HC |
           chr2:1111529-1114089 | 20130731
          Length = 218

 Score =  234 bits (598), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 140/223 (62%), Positives = 165/223 (73%), Gaps = 20/223 (8%)

Query: 3   CSGSEDQASDQLSKTLKQGERILAPTRRPDGTLRKPIRIRAGYVPQEEVAIYHPKPALEF 62
            S SEDQ   +  K  K GERILAPTRRPDGTLRKP+RIRAGY PQ+EVAIY PKPAL  
Sbjct: 1   MSTSEDQRQVK-QKQPKDGERILAPTRRPDGTLRKPVRIRAGYTPQDEVAIYQPKPAL-M 58

Query: 63  KKEMASHSGPPGYDPELEPKPRTKA-GKRNERKKEKRLQAALDKDSN----VAQDSGEQE 117
           +KEMASH GPPGYDP+L+ KP+TKA  +   +K++KRLQA   K++N    V +DS +QE
Sbjct: 59  RKEMASHIGPPGYDPQLDSKPKTKAVKRNERKKEKKRLQA---KETNLEPTVVEDSRKQE 115

Query: 118 TLATVENSSHSSEPVHSLTTQMNELAVSGDSSIVTPAANSVDGSE---SGQDIEXXXXXX 174
            +  VENS      VHSLT+Q+NELAVSGD+SIVTP  NSV+ SE   S QD++      
Sbjct: 116 NV-IVENS------VHSLTSQINELAVSGDTSIVTPTTNSVEASEPIGSAQDLDKRIRAL 168

Query: 175 XXXXXXTEALQQKSAEQDLKPEQLEKLAKLDDWRKELKQLEDK 217
                 TEALQ+K+AEQDLKPEQLEKLAKL+DWRKELKQLEDK
Sbjct: 169 KKKIRLTEALQEKTAEQDLKPEQLEKLAKLEDWRKELKQLEDK 211