Miyakogusa Predicted Gene

Lj6g3v2245600.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2245600.1 Non Characterized Hit- tr|I1HQS0|I1HQS0_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,41.84,2e-19,CBS,Cystathionine beta-synthase, core; no
description,Aldolase-type TIM barrel; seg,NULL; Domain in
,CUFF.60965.1
         (139 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g099290.1 | ClC chloride channel family protein | HC | chr...   193   5e-50
Medtr5g099290.2 | ClC chloride channel family protein | HC | chr...   193   5e-50
Medtr5g099290.5 | ClC chloride channel family protein | HC | chr...   177   2e-45
Medtr5g099290.3 | ClC chloride channel family protein | HC | chr...    69   2e-12
Medtr5g099290.4 | ClC chloride channel family protein | HC | chr...    69   2e-12

>Medtr5g099290.1 | ClC chloride channel family protein | HC |
           chr5:43532558-43538623 | 20130731
          Length = 712

 Score =  193 bits (490), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 96/139 (69%), Positives = 112/139 (80%)

Query: 1   MKTRYVSVSMCTLLTEVIDLMLVEKQSCAVXXXXXXXXXXXXXXXXXQDYGKFAKARSKN 60
           MKTRYV+VSMCT LT+VIDLML EKQSCAV                 + +GK AK+ SKN
Sbjct: 574 MKTRYVTVSMCTPLTKVIDLMLAEKQSCAVIVDTDDTLIGLLTLGDIRAFGKSAKSGSKN 633

Query: 61  PKELLVSELCLLDGGICSVPWTATPDMELRFAQMIMKEHGVDQVPVVRNIYEKTYPVGIL 120
           PKE+LVSELC+L+GGICSVP T TPDMEL  AQMIMKEHGV+QVPVV+NIYE+T+P+G+L
Sbjct: 634 PKEILVSELCVLNGGICSVPCTVTPDMELCHAQMIMKEHGVNQVPVVKNIYERTHPIGLL 693

Query: 121 DPDSINLTCSALATRESLS 139
           DPDSI+LT SALATR+SLS
Sbjct: 694 DPDSISLTYSALATRQSLS 712


>Medtr5g099290.2 | ClC chloride channel family protein | HC |
           chr5:43532620-43538623 | 20130731
          Length = 684

 Score =  193 bits (490), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 96/139 (69%), Positives = 112/139 (80%)

Query: 1   MKTRYVSVSMCTLLTEVIDLMLVEKQSCAVXXXXXXXXXXXXXXXXXQDYGKFAKARSKN 60
           MKTRYV+VSMCT LT+VIDLML EKQSCAV                 + +GK AK+ SKN
Sbjct: 546 MKTRYVTVSMCTPLTKVIDLMLAEKQSCAVIVDTDDTLIGLLTLGDIRAFGKSAKSGSKN 605

Query: 61  PKELLVSELCLLDGGICSVPWTATPDMELRFAQMIMKEHGVDQVPVVRNIYEKTYPVGIL 120
           PKE+LVSELC+L+GGICSVP T TPDMEL  AQMIMKEHGV+QVPVV+NIYE+T+P+G+L
Sbjct: 606 PKEILVSELCVLNGGICSVPCTVTPDMELCHAQMIMKEHGVNQVPVVKNIYERTHPIGLL 665

Query: 121 DPDSINLTCSALATRESLS 139
           DPDSI+LT SALATR+SLS
Sbjct: 666 DPDSISLTYSALATRQSLS 684


>Medtr5g099290.5 | ClC chloride channel family protein | HC |
           chr5:43532620-43537497 | 20130731
          Length = 721

 Score =  177 bits (450), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 87/128 (67%), Positives = 102/128 (79%)

Query: 1   MKTRYVSVSMCTLLTEVIDLMLVEKQSCAVXXXXXXXXXXXXXXXXXQDYGKFAKARSKN 60
           MKTRYV+VSMCT LT+VIDLML EKQSCAV                 + +GK AK+ SKN
Sbjct: 574 MKTRYVTVSMCTPLTKVIDLMLAEKQSCAVIVDTDDTLIGLLTLGDIRAFGKSAKSGSKN 633

Query: 61  PKELLVSELCLLDGGICSVPWTATPDMELRFAQMIMKEHGVDQVPVVRNIYEKTYPVGIL 120
           PKE+LVSELC+L+GGICSVP T TPDMEL  AQMIMKEHGV+QVPVV+NIYE+T+P+G+L
Sbjct: 634 PKEILVSELCVLNGGICSVPCTVTPDMELCHAQMIMKEHGVNQVPVVKNIYERTHPIGLL 693

Query: 121 DPDSINLT 128
           DPDSI+LT
Sbjct: 694 DPDSISLT 701


>Medtr5g099290.3 | ClC chloride channel family protein | HC |
           chr5:43532620-43536786 | 20130731
          Length = 615

 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/69 (55%), Positives = 45/69 (65%), Gaps = 2/69 (2%)

Query: 1   MKTRYVSVSMCTLLTEVIDLMLVEKQSCAVXXXXXXXXXXXXXXXXXQDYGKFAKARSKN 60
           MKTRYV+VSMCT LT+VIDLML EKQSCAV                 + +GK AK+ SKN
Sbjct: 546 MKTRYVTVSMCTPLTKVIDLMLAEKQSCAVIVDTDDTLIGLLTLGDIRAFGKSAKSGSKN 605

Query: 61  PK--ELLVS 67
           PK  E+L+S
Sbjct: 606 PKVQEILIS 614


>Medtr5g099290.4 | ClC chloride channel family protein | HC |
           chr5:43532620-43538498 | 20130731
          Length = 643

 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/69 (55%), Positives = 45/69 (65%), Gaps = 2/69 (2%)

Query: 1   MKTRYVSVSMCTLLTEVIDLMLVEKQSCAVXXXXXXXXXXXXXXXXXQDYGKFAKARSKN 60
           MKTRYV+VSMCT LT+VIDLML EKQSCAV                 + +GK AK+ SKN
Sbjct: 574 MKTRYVTVSMCTPLTKVIDLMLAEKQSCAVIVDTDDTLIGLLTLGDIRAFGKSAKSGSKN 633

Query: 61  PK--ELLVS 67
           PK  E+L+S
Sbjct: 634 PKVQEILIS 642