Miyakogusa Predicted Gene

Lj6g3v2222030.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2222030.1 tr|B9I204|B9I204_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_772475 PE=4
SV=1,27.85,0.00000000000002,coiled-coil,NULL; seg,NULL,CUFF.60896.1
         (420 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g008130.1 | hypothetical protein | HC | chr2:1310881-13125...   331   8e-91

>Medtr2g008130.1 | hypothetical protein | HC | chr2:1310881-1312545
           | 20130731
          Length = 420

 Score =  331 bits (849), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 206/427 (48%), Positives = 255/427 (59%), Gaps = 53/427 (12%)

Query: 1   MELLESEIRIQPPRQTHSPSVPPP---PQKKTRDLPNLNECHACGFKADVCTGKNRLRPL 57
           M +LE E R +   Q+   S  P    PQKKTRDLPNL ECHACGFK DVCTGKN+L+ L
Sbjct: 1   MAILEPEKRKESQSQSPESSENPSHSDPQKKTRDLPNLTECHACGFKIDVCTGKNKLQTL 60

Query: 58  YSEWRVVLLCKKCYFSVESSQICSYCFSGASPECFRCIKCKHSVHQSCFLKYKDVAPWSY 117
           YSEWRVVLLCKKC+  V+SSQICSYCFS +S +  RC+KCKHSVH++CFLK K+VAPWSY
Sbjct: 61  YSEWRVVLLCKKCFSCVKSSQICSYCFSESSSDSLRCVKCKHSVHKNCFLKNKNVAPWSY 120

Query: 118 ACLGSDFSVCVDCWIPKPVAIXXXXXXXXXXXXXXXXXAEK-------EGSRVLGDGNLV 170
           +C+GS+FSVCVDCW+PK V I                  +K       E SRVL  GNL 
Sbjct: 121 SCVGSEFSVCVDCWVPKHVEISRRRTIRSLRKVKSGVIVKKGRVDLVKESSRVLKGGNLT 180

Query: 171 RPMEDVVRDXXXXXXXXXXX----XXXXXXXXXXXXXXVEIANKALSLVANKEDCSLNLH 226
           R MEDVV+D                             VE+ANK L++ AN+E+ +LNL 
Sbjct: 181 RSMEDVVKDAKQKAKKKVEAAAMARRVASKKAVAARRAVELANKTLNIAANREEGTLNLP 240

Query: 227 TKMGPVKVVDGAELSFELHSNLNGTPKIAKSWCLLNSTCFDAPKRFASGVDSSFKISNSR 286
           +KM PVKVV  + L+F+L   LN +P I+KS CLL++   DAPKR+   VDSS K SNSR
Sbjct: 241 SKMDPVKVVGCSCLAFDLC--LNNSPMISKSRCLLDTNNLDAPKRWTFSVDSSGKTSNSR 298

Query: 287 NVGGCDDMHEVFNDIKLYKDSHKSLREPSVSIGSLDTDSSNDLNCLCMGRSDMKNSPKVG 346
           +  G                          S+ SLD+DSS DL+C C+GR DM  SPK G
Sbjct: 299 SASG--------------------------SLRSLDSDSSTDLSCPCIGRCDMITSPKDG 332

Query: 347 RCTAALDVKVIAEELLKQGEGSCSNRLINFNGEDCGMECDRKLADYAFHREERCQQDRYI 406
            CTA           LK+GEGSCS+RLINF+GE+  +  + + +D  F +  R + DRY 
Sbjct: 333 ECTAE----------LKEGEGSCSDRLINFSGENSALHGEER-SDRYFFKYVRRKSDRYF 381

Query: 407 LKYSRRH 413
            KYSRR 
Sbjct: 382 FKYSRRR 388