Miyakogusa Predicted Gene

Lj6g3v2221970.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2221970.1 Non Characterized Hit- tr|Q60EC1|Q60EC1_ORYSJ
Putative clathrin assembly protein OS=Oryza sativa
sub,47.86,4e-19,seg,NULL; ENTH,Epsin-like, N-terminal; CLATHRIN
ASSEMBLY PROTEIN,NULL; no description,ENTH/VHS; ANTH,CUFF.60891.1
         (103 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g008170.1 | clathrin assembly plant-like protein, putative...   144   2e-35
Medtr8g008860.1 | clathrin assembly plant-like protein | HC | ch...   125   6e-30
Medtr4g114960.1 | clathrin assembly plant-like protein, putative...    69   9e-13
Medtr3g080490.1 | clathrin assembly protein | LC | chr3:36416634...    62   9e-11
Medtr3g106900.2 | clathrin assembly plant-like protein, putative...    61   2e-10
Medtr3g106900.1 | clathrin assembly plant-like protein, putative...    61   2e-10

>Medtr2g008170.1 | clathrin assembly plant-like protein, putative |
           HC | chr2:1328318-1330353 | 20130731
          Length = 607

 Score =  144 bits (363), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 73/111 (65%), Positives = 80/111 (72%), Gaps = 9/111 (8%)

Query: 1   MSDFRDNSKTGAWDFSAFVRTYSLYLDERLEYKMQSRRGKRGVVAYXXXXXXXXXXXXXX 60
           MSDFRD+S++G+WDFSAFVRTYSLYLDERLEYKMQSRRGKR +  Y              
Sbjct: 122 MSDFRDSSQSGSWDFSAFVRTYSLYLDERLEYKMQSRRGKRSMFGYDEDEEERERERERE 181

Query: 61  XXXX---------XIVIRSTPVRDMKLEQIFSKMQHLQLLLERFLACRPTG 102
                         IV+RSTPVR+MKLEQIFSKMQHLQLLLERFLACRPTG
Sbjct: 182 RESEREKERDKGREIVVRSTPVREMKLEQIFSKMQHLQLLLERFLACRPTG 232


>Medtr8g008860.1 | clathrin assembly plant-like protein | HC |
           chr8:1923626-1926030 | 20130731
          Length = 588

 Score =  125 bits (315), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 60/107 (56%), Positives = 75/107 (70%), Gaps = 5/107 (4%)

Query: 1   MSDFRDNSKTGAWDFSAFVRTYSLYLDERLEYKMQSRRGKRGVVAYXXXXXXXXXXXX-- 58
           MSDFRD SK+ +WD+S+FVRTY+LYLDERLEY+MQ +RG+ G  AY              
Sbjct: 122 MSDFRDKSKSNSWDYSSFVRTYALYLDERLEYRMQYKRGRSGRFAYDEDEEEQSRESKRE 181

Query: 59  ---XXXXXXXIVIRSTPVRDMKLEQIFSKMQHLQLLLERFLACRPTG 102
                     IV+RSTP+R+MK + +FS+MQHLQLLLERF+ACRPTG
Sbjct: 182 RYRERDRDKEIVVRSTPLREMKTDDLFSRMQHLQLLLERFMACRPTG 228


>Medtr4g114960.1 | clathrin assembly plant-like protein, putative |
           HC | chr4:47396184-47393729 | 20130731
          Length = 601

 Score = 68.9 bits (167), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 34/102 (33%), Positives = 57/102 (55%), Gaps = 8/102 (7%)

Query: 1   MSDFRDNSKTGAWDFSAFVRTYSLYLDERLEYKMQSRRGKRGVVAYXXXXXXXXXXXXXX 60
           MSDFRD + + +WD + FVR Y++YLD+++E+ + +++ K GVV                
Sbjct: 121 MSDFRDEAHSSSWDHAGFVRVYAMYLDQKVEFLVYNKKLK-GVVDSGDGEFGSVKRNEEK 179

Query: 61  XXXXXIVIRSTPVRDMKLEQIFSKMQHLQLLLERFLACRPTG 102
                     TPVR+MK E++  +++HL  +L+  L C+P G
Sbjct: 180 SDV-------TPVREMKAERVLDRLKHLLQILDSVLGCKPHG 214


>Medtr3g080490.1 | clathrin assembly protein | LC |
           chr3:36416634-36413839 | 20130731
          Length = 931

 Score = 62.4 bits (150), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 16/103 (15%)

Query: 1   MSDFRDNSKTGAWDFSAFVRTYSLYLDERLEYKMQSRRGKRGVVAYXXXXXXXXXXXXXX 60
           +S F+D+S +  WD++AF+RT++LYLDERL+  +  +  +R    Y              
Sbjct: 118 LSSFKDDSNSSPWDYTAFIRTFALYLDERLDCFLTGKLQRR--FTYNNRFHEKNQ----- 170

Query: 61  XXXXXIVIRSTP-VRDMKLEQIFSKMQHLQLLLERFLACRPTG 102
                   R+ P +RDMK   + +++ + Q LL+R +  RPTG
Sbjct: 171 --------RNEPGIRDMKPTLVLNRITYWQRLLDRAIGTRPTG 205


>Medtr3g106900.2 | clathrin assembly plant-like protein, putative |
           HC | chr3:49401713-49404604 | 20130731
          Length = 641

 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 26/37 (70%), Positives = 31/37 (83%)

Query: 67  VIRSTPVRDMKLEQIFSKMQHLQLLLERFLACRPTGL 103
           ++  TP+RDMK E+IF KM HLQ LL+RFLACRPTGL
Sbjct: 220 IVTVTPLRDMKPERIFGKMSHLQRLLDRFLACRPTGL 256



 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 30/39 (76%)

Query: 1   MSDFRDNSKTGAWDFSAFVRTYSLYLDERLEYKMQSRRG 39
           MSDFRD + + +WD SAFVRTY+LYLD+RLE  +  R+ 
Sbjct: 121 MSDFRDEAHSSSWDHSAFVRTYALYLDQRLELMLFDRKA 159


>Medtr3g106900.1 | clathrin assembly plant-like protein, putative |
           HC | chr3:49401686-49404604 | 20130731
          Length = 641

 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 26/37 (70%), Positives = 31/37 (83%)

Query: 67  VIRSTPVRDMKLEQIFSKMQHLQLLLERFLACRPTGL 103
           ++  TP+RDMK E+IF KM HLQ LL+RFLACRPTGL
Sbjct: 220 IVTVTPLRDMKPERIFGKMSHLQRLLDRFLACRPTGL 256



 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 30/39 (76%)

Query: 1   MSDFRDNSKTGAWDFSAFVRTYSLYLDERLEYKMQSRRG 39
           MSDFRD + + +WD SAFVRTY+LYLD+RLE  +  R+ 
Sbjct: 121 MSDFRDEAHSSSWDHSAFVRTYALYLDQRLELMLFDRKA 159