Miyakogusa Predicted Gene

Lj6g3v2218160.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2218160.1 Non Characterized Hit- tr|F4KDK4|F4KDK4_ARATH
Uncharacterized protein OS=Arabidopsis thaliana
GN=At5,38.32,1e-18,seg,NULL,CUFF.60826.1
         (251 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g008960.1 | transmembrane protein, putative | HC | chr2:17...   127   1e-29

>Medtr2g008960.1 | transmembrane protein, putative | HC |
           chr2:1708693-1711689 | 20130731
          Length = 374

 Score =  127 bits (318), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 71/134 (52%), Positives = 85/134 (63%), Gaps = 9/134 (6%)

Query: 39  FIYFVRKYKLLQTLRFILLNSXXXXXXXXXXXXXXDKYDAVKVKQHHQQLYKYTSAAPPY 98
           F+ F   YKL+QTLRFI+L                + Y+   +K  +     +T     +
Sbjct: 40  FLSFSVNYKLIQTLRFIILTFYLFLLRFIPSFFFIENYEHSAIKTQNN----FT-----H 90

Query: 99  APRNDTAIGRALSQLLSALNDIPVSSRKYQVVRSLAESIIDDNHQGGVHALREVNRGVMS 158
             RNDTAIGRALSQLLSALNDIPVSSRKY+VVRSL E IIDDNH  GVH+LREVNR  +S
Sbjct: 91  DTRNDTAIGRALSQLLSALNDIPVSSRKYEVVRSLTEKIIDDNHLDGVHSLREVNRVALS 150

Query: 159 AAFVRTMKQLEATV 172
           +AF R + QLE  V
Sbjct: 151 SAFGRALGQLEVKV 164