Miyakogusa Predicted Gene

Lj6g3v2217030.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2217030.1 tr|B9H725|B9H725_POPTR Methyl binding domain
protein OS=Populus trichocarpa GN=MBD909 PE=4
SV=1,40.37,2e-17,seg,NULL; ZINC_FINGER_C2H2_1,Zinc finger, C2H2;
ZINC_FINGER_C2H2_2,Zinc finger, C2H2,CUFF.60833.1
         (312 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g009040.1 | methyl-CpG-binding domain protein | HC | chr2:...   363   e-100

>Medtr2g009040.1 | methyl-CpG-binding domain protein | HC |
           chr2:1743193-1738190 | 20130731
          Length = 806

 Score =  363 bits (932), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 192/337 (56%), Positives = 230/337 (68%), Gaps = 26/337 (7%)

Query: 1   MTFGEKDSYLQHLLSVHQRTTRRYRLGSTVGDGVIIKDGKFECQFCHKVFLERRRYNGHV 60
           MTF EKD+YLQHLLS+HQ+TTRRYRLGS+V DGVIIKDGKFECQFCHKVFLE+RRYN HV
Sbjct: 356 MTFDEKDAYLQHLLSIHQKTTRRYRLGSSVSDGVIIKDGKFECQFCHKVFLEKRRYNSHV 415

Query: 61  GIHVRNYVRRVEDSPGQTNVQRADKSPVLEEVPSRISKMDALIEIAQNSIMEDSVMEPHN 120
           GIHVRNY+RR ED PGQ NV  A++SPV +E PSRI+KMDALIEIAQNSI+EDSV EP+ 
Sbjct: 416 GIHVRNYLRRAEDLPGQPNVLGAEESPVTDETPSRITKMDALIEIAQNSIIEDSVREPYC 475

Query: 121 SAKMNVIPDSEIAVGDFDQDMDFEYP------------TDVVDDLNLQCSTHLLMNGKGD 168
           S+ +N IP SEIAVGD D+D++ E P            T+VV DLN Q S  L M+G  +
Sbjct: 476 SSTLNTIPVSEIAVGDLDEDINAESPFGEQKMEKSLTGTNVVSDLNQQGSPRLPMDGTIE 535

Query: 169 EIDDYNQVIDAEGVTLLDSMDLSYVNEQNVHVSGTSKGKEDVALTAAGFGQSGIDLEVVS 228
           EID  N+V+DA+ V+ LD+M L  VN++NV    TS+GK DVALT  GF +SG +L+  S
Sbjct: 536 EIDANNRVVDAKMVSFLDNMGLLSVNKKNVDAPDTSEGKGDVALTVEGFDRSGSELQGAS 595

Query: 229 QSPLFPL--------------SGCTNSKGQFKLDEDNSKNSELKFSLDGCKDVPVRADFQ 274
           QSPL                 SGCT ++G  KLDED+S  S+LK  LD CKDVP  ++  
Sbjct: 596 QSPLLHSSGNHMKPGSKKSENSGCTKTRGDLKLDEDSSNKSDLKIGLDSCKDVPGVSNVH 655

Query: 275 XXXXXXXXXXXXXXXXXNRSISTEQPLDCFPAFSSDK 311
                            N S+S EQ LD F AFSSDK
Sbjct: 656 VTAMPTSTENVVQSKVSNPSVSPEQSLDSFSAFSSDK 692