Miyakogusa Predicted Gene

Lj6g3v2192220.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2192220.1 Non Characterized Hit- tr|B7FLG4|B7FLG4_MEDTR
Putative uncharacterized protein OS=Medicago truncatul,74.73,0,no
description,WD40/YVTN repeat-like-containing domain; WD40
repeat-like,WD40-repeat-containing doma,CUFF.60771.1
         (368 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g009800.2 | U3 small nucleolar RNA-associated-like protein...   490   e-138
Medtr2g009800.1 | U3 small nucleolar RNA-associated-like protein...   490   e-138
Medtr2g101620.1 | U3 small nucleolar RNA-associated-like protein...   479   e-135

>Medtr2g009800.2 | U3 small nucleolar RNA-associated-like protein |
           HC | chr2:2091359-2093414 | 20130731
          Length = 555

 Score =  490 bits (1261), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 264/376 (70%), Positives = 290/376 (77%), Gaps = 18/376 (4%)

Query: 2   MSLISQNARPKIEEK--EVVDREE-----NSDVDTVXXXXXXXXXXXEEHVVDMVEQVRE 54
           MSLISQNAR K E K  EVV   E       DVDTV           E+      EQV+E
Sbjct: 1   MSLISQNARSKNETKREEVVKGNEVEDGKEFDVDTVEAKKRKLDGKEEQLAK---EQVKE 57

Query: 55  MRKLESFLFGSLYSPLESGKEVDGEVEP------SDLFFTDRSADSVLSVCXXXXXXXXX 108
           M+KLESFLFGSLYSP E GK  D EV+       S+LFFTDRSADSVL+V          
Sbjct: 58  MKKLESFLFGSLYSPPEFGKGDDDEVDAAASATASNLFFTDRSADSVLTV-YQEDADFSD 116

Query: 109 XXXXXXXXXRKPAWVDEEEEKFTVNIAKVNRLRKLRKDEDESFISGSEYVARLRAHHVKL 168
                    RKP WVDEEEEK TVNIAKVNRLRKLRK+EDE  ISGSEYV+RLRA H KL
Sbjct: 117 ESDNDDALKRKPVWVDEEEEKVTVNIAKVNRLRKLRKEEDEDLISGSEYVSRLRAQHAKL 176

Query: 169 NRGTDWAQLDSRLKLDRSDYDGELTDDENEAVVRRGYENVDDILRTNEDLVANSSSKLLP 228
           NRGTDWAQLDS  K+D S  D ELTDDEN+A V RGYE++DDILRTNEDLV  SSSKLLP
Sbjct: 177 NRGTDWAQLDSGSKMDGSS-DDELTDDENKAAVSRGYEDLDDILRTNEDLVVKSSSKLLP 235

Query: 229 GHLEYSRLVDANIQDPSNGPVNSVQFHRNAQLLLTAGLDQKLRFFQIDGKRNTKIQSIFL 288
           GHLEYS+LVDAN+QDP+NGP+NSVQFHRN QLLL AGLD+KL+FFQIDGKRNTKI+SIFL
Sbjct: 236 GHLEYSKLVDANVQDPANGPINSVQFHRNGQLLLAAGLDRKLKFFQIDGKRNTKIESIFL 295

Query: 289 EDCPIRKASFLPDGSQVILSGRRKFFYSFDLVKGTLEKIGPLVGREEKSLEVFELSSDSQ 348
           EDCPIRKASFLPDGSQVI+SGRRKFFYS DLVK  ++KIGPL+GREEKS+EVFE+S DSQ
Sbjct: 296 EDCPIRKASFLPDGSQVIISGRRKFFYSLDLVKARVDKIGPLLGREEKSIEVFEVSPDSQ 355

Query: 349 MIAFVGNEGYILLVSV 364
           +IAFVGNEGYILLVS 
Sbjct: 356 LIAFVGNEGYILLVST 371


>Medtr2g009800.1 | U3 small nucleolar RNA-associated-like protein |
           HC | chr2:2090639-2093481 | 20130731
          Length = 555

 Score =  490 bits (1261), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 264/376 (70%), Positives = 290/376 (77%), Gaps = 18/376 (4%)

Query: 2   MSLISQNARPKIEEK--EVVDREE-----NSDVDTVXXXXXXXXXXXEEHVVDMVEQVRE 54
           MSLISQNAR K E K  EVV   E       DVDTV           E+      EQV+E
Sbjct: 1   MSLISQNARSKNETKREEVVKGNEVEDGKEFDVDTVEAKKRKLDGKEEQLAK---EQVKE 57

Query: 55  MRKLESFLFGSLYSPLESGKEVDGEVEP------SDLFFTDRSADSVLSVCXXXXXXXXX 108
           M+KLESFLFGSLYSP E GK  D EV+       S+LFFTDRSADSVL+V          
Sbjct: 58  MKKLESFLFGSLYSPPEFGKGDDDEVDAAASATASNLFFTDRSADSVLTV-YQEDADFSD 116

Query: 109 XXXXXXXXXRKPAWVDEEEEKFTVNIAKVNRLRKLRKDEDESFISGSEYVARLRAHHVKL 168
                    RKP WVDEEEEK TVNIAKVNRLRKLRK+EDE  ISGSEYV+RLRA H KL
Sbjct: 117 ESDNDDALKRKPVWVDEEEEKVTVNIAKVNRLRKLRKEEDEDLISGSEYVSRLRAQHAKL 176

Query: 169 NRGTDWAQLDSRLKLDRSDYDGELTDDENEAVVRRGYENVDDILRTNEDLVANSSSKLLP 228
           NRGTDWAQLDS  K+D S  D ELTDDEN+A V RGYE++DDILRTNEDLV  SSSKLLP
Sbjct: 177 NRGTDWAQLDSGSKMDGSS-DDELTDDENKAAVSRGYEDLDDILRTNEDLVVKSSSKLLP 235

Query: 229 GHLEYSRLVDANIQDPSNGPVNSVQFHRNAQLLLTAGLDQKLRFFQIDGKRNTKIQSIFL 288
           GHLEYS+LVDAN+QDP+NGP+NSVQFHRN QLLL AGLD+KL+FFQIDGKRNTKI+SIFL
Sbjct: 236 GHLEYSKLVDANVQDPANGPINSVQFHRNGQLLLAAGLDRKLKFFQIDGKRNTKIESIFL 295

Query: 289 EDCPIRKASFLPDGSQVILSGRRKFFYSFDLVKGTLEKIGPLVGREEKSLEVFELSSDSQ 348
           EDCPIRKASFLPDGSQVI+SGRRKFFYS DLVK  ++KIGPL+GREEKS+EVFE+S DSQ
Sbjct: 296 EDCPIRKASFLPDGSQVIISGRRKFFYSLDLVKARVDKIGPLLGREEKSIEVFEVSPDSQ 355

Query: 349 MIAFVGNEGYILLVSV 364
           +IAFVGNEGYILLVS 
Sbjct: 356 LIAFVGNEGYILLVST 371


>Medtr2g101620.1 | U3 small nucleolar RNA-associated-like protein |
           HC | chr2:43716784-43719471 | 20130731
          Length = 555

 Score =  479 bits (1234), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 259/376 (68%), Positives = 289/376 (76%), Gaps = 18/376 (4%)

Query: 2   MSLISQNARPKIEEK-------EVVDREENSDVDTVXXXXXXXXXXXEEHVVDMVEQVRE 54
           MSLISQNAR + E K       + V+  ++ DVDTV           EEH+    EQV+E
Sbjct: 1   MSLISQNARSRNETKREEDLKAKEVEDGQDYDVDTVEVKKRKLDGK-EEHLAK--EQVKE 57

Query: 55  MRKLESFLFGSLYSPLESGKEVDGEVEP------SDLFFTDRSADSVLSVCXXXXXXXXX 108
           M+KLESFLFGSLYSPLE G   D E E       S+LFFTDRSADS L+V          
Sbjct: 58  MKKLESFLFGSLYSPLEFGNGDDDEGEAMTAAKASNLFFTDRSADSGLTV-YQEDSDFSD 116

Query: 109 XXXXXXXXXRKPAWVDEEEEKFTVNIAKVNRLRKLRKDEDESFISGSEYVARLRAHHVKL 168
                    +KP WVDEEEEK TVNIAKVNRLRKLRK+EDE+ ISGSEYV+RLRA HVKL
Sbjct: 117 GSCGDDALRKKPVWVDEEEEKVTVNIAKVNRLRKLRKEEDENVISGSEYVSRLRAQHVKL 176

Query: 169 NRGTDWAQLDSRLKLDRSDYDGELTDDENEAVVRRGYENVDDILRTNEDLVANSSSKLLP 228
           NRGTDWAQLDS  K+D S  D ELTDD N  +V RGYE++DDILRTNEDLV  SSSKLLP
Sbjct: 177 NRGTDWAQLDSGSKMDGSS-DDELTDDGNNVLVSRGYEDLDDILRTNEDLVVKSSSKLLP 235

Query: 229 GHLEYSRLVDANIQDPSNGPVNSVQFHRNAQLLLTAGLDQKLRFFQIDGKRNTKIQSIFL 288
           GH+EYS+LVDANIQDPSNGP+NSVQFHRN QLLL AGLD+ LRFFQIDGKRNTKIQSIFL
Sbjct: 236 GHIEYSKLVDANIQDPSNGPINSVQFHRNGQLLLAAGLDRNLRFFQIDGKRNTKIQSIFL 295

Query: 289 EDCPIRKASFLPDGSQVILSGRRKFFYSFDLVKGTLEKIGPLVGREEKSLEVFELSSDSQ 348
           EDCPIRKASFLPDGSQVI+SGRRKFFYS DLVK  ++KIGPL+ REEKS+EVFE+S DS+
Sbjct: 296 EDCPIRKASFLPDGSQVIISGRRKFFYSLDLVKARVDKIGPLLDREEKSIEVFEVSPDSK 355

Query: 349 MIAFVGNEGYILLVSV 364
           MIAFVGNEG+ILLVS 
Sbjct: 356 MIAFVGNEGHILLVST 371