Miyakogusa Predicted Gene

Lj6g3v2171960.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2171960.1 Non Characterized Hit- tr|Q9FGE8|Q9FGE8_ARATH
Putative uncharacterized protein OS=Arabidopsis
thalia,47.15,2e-19,seg,NULL,CUFF.60743.1
         (158 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g010200.1 | hypothetical protein | HC | chr2:2266450-22672...   130   5e-31

>Medtr2g010200.1 | hypothetical protein | HC | chr2:2266450-2267211
           | 20130731
          Length = 154

 Score =  130 bits (327), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 76/161 (47%), Positives = 93/161 (57%), Gaps = 10/161 (6%)

Query: 1   MALKIYQIPTLFTNSPVTLFITRHNLTTRISCSGSGGISDXXXXXXXXXXXTRINARAVL 60
           MAL+I  +P  FT SP+TL         RISC+ +   +D           + INARA  
Sbjct: 1   MALRIQHVPIFFTISPITLSTNPKAKPPRISCTNNN--NDVSLASEFAEKASIINARAKQ 58

Query: 61  AEDAMRKSRKILFRELCEYLGLKEDEARENWSKMGEDEKLVLVKGFVAEWGSCFHPLSAR 120
           AE+AMRKSR I+F+ELCEYL L E++A+  W KMGEDEK VLV GFV E G  FHPLS +
Sbjct: 59  AEEAMRKSRNIVFKELCEYLELNEEDAKLKWKKMGEDEKWVLVNGFVTELGQFFHPLSEK 118

Query: 121 STK---QMVEEYLNAPPPNSPHSDTSSSALFPGFKRIIGFP 158
           +TK   +      N P    P +   S  LFP F  IIGFP
Sbjct: 119 ATKELLEEYLLQENQP----PKASQISYPLFP-FDSIIGFP 154