Miyakogusa Predicted Gene
- Lj6g3v2168640.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v2168640.1 Non Characterized Hit- tr|F6HIM0|F6HIM0_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,60.26,0,no
description,Helix-loop-helix domain; HLH,Helix-loop-helix domain;
coiled-coil,NULL; helix loop
he,NODE_85107_length_903_cov_18.770763.path1.1
(221 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g081370.1 | BHLH domain class transcription factor | HC | ... 243 1e-64
Medtr4g081370.2 | BHLH domain class transcription factor | HC | ... 238 3e-63
Medtr2g082640.1 | BHLH domain class transcription factor | HC | ... 226 9e-60
Medtr2g089000.1 | BHLH domain class transcription factor | HC | ... 181 7e-46
Medtr1g043430.1 | BHLH domain class transcription factor | HC | ... 156 2e-38
Medtr4g075480.2 | transcription factor | HC | chr4:28837847-2884... 74 1e-13
Medtr4g075480.1 | transcription factor | HC | chr4:28837847-2884... 74 1e-13
Medtr4g075480.3 | transcription factor | HC | chr4:28837847-2884... 74 1e-13
Medtr1g032600.1 | transcription factor | HC | chr1:11621022-1162... 68 9e-12
Medtr1g032600.2 | transcription factor | HC | chr1:11621022-1162... 68 9e-12
Medtr4g108360.1 | BHLH transcription factor | HC | chr4:44950290... 52 6e-07
>Medtr4g081370.1 | BHLH domain class transcription factor | HC |
chr4:31541350-31537381 | 20130731
Length = 237
Score = 243 bits (619), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 121/233 (51%), Positives = 156/233 (66%), Gaps = 13/233 (5%)
Query: 2 DNCNWMLDYGGYLELDXXXXXXXXXXXX-------------TLSVELDDTYGNSDAFKEX 48
+N NW+ DYG Y ++ +S E+D + G+SD KE
Sbjct: 5 ENTNWINDYGFYDDIPVPDSTFALPSSAFTWPTQPPFNLSSNVSAEVDGSLGDSDGLKES 64
Query: 49 XXXXXXXXXXCNLSGSKACREKMRRDQLNDRFLELSSILDPGRPSKMDKMGILSDAVRVV 108
C + SKACREK+RRD+LND+F+EL SIL+PGRP+K DK IL DAVR+V
Sbjct: 65 GSKKRVRSESCAATSSKACREKLRRDRLNDKFIELGSILEPGRPAKTDKAAILIDAVRMV 124
Query: 109 SQLREDAQKLRESTENLQGKINELKAEKNELRDEKQQLRAEKDIIEQKLKAISSQPSFLP 168
+QLR +AQKL+++ LQ KI ELK EKNELRDEKQ+L+AEK+ +EQ+LK++++ PSFLP
Sbjct: 125 TQLRGEAQKLKDANSGLQEKIKELKVEKNELRDEKQRLKAEKEKLEQQLKSMNAPPSFLP 184
Query: 169 HHSTLPTAFPAPRHVVGSKLMPIIGYPGVSMWQFLPSAAVDTSQDHVLRPPVA 221
+ LP AF A G+KL+P I YPGV+MWQF+P AAVDTSQDHVLRPPVA
Sbjct: 185 TPTALPAAFAAQGQAHGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA 237
>Medtr4g081370.2 | BHLH domain class transcription factor | HC |
chr4:31541177-31537807 | 20130731
Length = 193
Score = 238 bits (608), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 113/191 (59%), Positives = 144/191 (75%)
Query: 31 LSVELDDTYGNSDAFKEXXXXXXXXXXXCNLSGSKACREKMRRDQLNDRFLELSSILDPG 90
+ E+D + G+SD KE C + SKACREK+RRD+LND+F+EL SIL+PG
Sbjct: 3 MGAEVDGSLGDSDGLKESGSKKRVRSESCAATSSKACREKLRRDRLNDKFIELGSILEPG 62
Query: 91 RPSKMDKMGILSDAVRVVSQLREDAQKLRESTENLQGKINELKAEKNELRDEKQQLRAEK 150
RP+K DK IL DAVR+V+QLR +AQKL+++ LQ KI ELK EKNELRDEKQ+L+AEK
Sbjct: 63 RPAKTDKAAILIDAVRMVTQLRGEAQKLKDANSGLQEKIKELKVEKNELRDEKQRLKAEK 122
Query: 151 DIIEQKLKAISSQPSFLPHHSTLPTAFPAPRHVVGSKLMPIIGYPGVSMWQFLPSAAVDT 210
+ +EQ+LK++++ PSFLP + LP AF A G+KL+P I YPGV+MWQF+P AAVDT
Sbjct: 123 EKLEQQLKSMNAPPSFLPTPTALPAAFAAQGQAHGNKLVPFISYPGVAMWQFMPPAAVDT 182
Query: 211 SQDHVLRPPVA 221
SQDHVLRPPVA
Sbjct: 183 SQDHVLRPPVA 193
>Medtr2g082640.1 | BHLH domain class transcription factor | HC |
chr2:34669163-34671763 | 20130731
Length = 230
Score = 226 bits (577), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 117/226 (51%), Positives = 149/226 (65%), Gaps = 6/226 (2%)
Query: 2 DNCNWMLDYGGYLELDXXXXXXXXXX-----XXTLSVELDDT-YGNSDAFKEXXXXXXXX 55
+N NW+ DY E+ +E+DD+ +SD KE
Sbjct: 5 ENTNWLFDYPLIDEIPVSVDGSFAFTWPPPHLSNGGIEMDDSSLVDSDGIKEPGSKKRGR 64
Query: 56 XXXCNLSGSKACREKMRRDQLNDRFLELSSILDPGRPSKMDKMGILSDAVRVVSQLREDA 115
C S SKACREK+RRD+LND+F+EL SIL+PGRP K DK IL DAVR+V+QLR +A
Sbjct: 65 SDSCAPSSSKACREKLRRDRLNDKFVELGSILEPGRPPKTDKAAILIDAVRMVTQLRGEA 124
Query: 116 QKLRESTENLQGKINELKAEKNELRDEKQQLRAEKDIIEQKLKAISSQPSFLPHHSTLPT 175
QKL++S LQ KI ELK EKNELRDEKQ+L+AEK+ +EQ++K++++QP FL H +P
Sbjct: 125 QKLKDSNSGLQEKIKELKVEKNELRDEKQRLKAEKEKLEQQVKSMNTQPGFLTHPPAIPA 184
Query: 176 AFPAPRHVVGSKLMPIIGYPGVSMWQFLPSAAVDTSQDHVLRPPVA 221
AF +KLMP + YPGV+MWQF+P AAVDTSQDHVLRPPVA
Sbjct: 185 AFAHQGQAPSNKLMPFMSYPGVAMWQFMPPAAVDTSQDHVLRPPVA 230
>Medtr2g089000.1 | BHLH domain class transcription factor | HC |
chr2:37541705-37539428 | 20130731
Length = 260
Score = 181 bits (458), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 90/160 (56%), Positives = 118/160 (73%), Gaps = 6/160 (3%)
Query: 62 SGSKACREKMRRDQLNDRFLELSSILDPGRPSKMDKMGILSDAVRVVSQLREDAQKLRES 121
S SKA REK+RRD+LNDRF+ELSS+L+P K DK+ +L+DAVRVV+QLR +A++L+E
Sbjct: 107 SSSKAGREKVRRDKLNDRFMELSSVLEPDTLPKTDKVSLLNDAVRVVTQLRNEAERLKER 166
Query: 122 TENLQGKINELKAEKNELRDEKQQLRAEKDIIEQKLKAISSQPSFLPHHSTLPTAFPAPR 181
+ L+ K+ ELKAEK ELRDEK +L+ +K+ +EQ++K S Q +FL + A A
Sbjct: 167 NDELREKVKELKAEKKELRDEKNKLKLDKEKLEQQVKLASVQSNFLSN------AMAAKG 220
Query: 182 HVVGSKLMPIIGYPGVSMWQFLPSAAVDTSQDHVLRPPVA 221
KLMP IGYPG+SMWQF+ A VDTSQDH+LRPPVA
Sbjct: 221 QTANHKLMPFIGYPGISMWQFMSPATVDTSQDHLLRPPVA 260
>Medtr1g043430.1 | BHLH domain class transcription factor | HC |
chr1:16308113-16312292 | 20130731
Length = 246
Score = 156 bits (394), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 81/167 (48%), Positives = 115/167 (68%), Gaps = 13/167 (7%)
Query: 59 CNLSGSKACREKMRRDQLNDRFLELSSILDPGRPSKMDKMGILSDAVRVVSQLREDAQKL 118
C +G+KACREK+RR++LN+RF +LS++L+PGRP + DK IL DA+RV+SQL+ +AQ+L
Sbjct: 89 CYKAGTKACREKLRREKLNERFCDLSAVLEPGRPVRTDKPAILDDAIRVLSQLKTEAQEL 148
Query: 119 RESTENLQGKINELKAEKNELRDEKQQLRAEKDIIEQKLKAISSQPS-FLPHHSTLPTAF 177
+ES E L +I LKAEKNELR+EK L+A+K+ IE++LK++ P+ F+P
Sbjct: 149 KESNEKLLEEIKCLKAEKNELREEKLVLKADKEKIEKQLKSMPVSPAGFMP--------- 199
Query: 178 PAPRHVVGSKLMPIIGYPG---VSMWQFLPSAAVDTSQDHVLRPPVA 221
P P + + + YP + MW +LP +A DTSQDH LRPP A
Sbjct: 200 PPPMAAYQASVNKMAVYPNYGYIPMWHYLPQSARDTSQDHELRPPAA 246
>Medtr4g075480.2 | transcription factor | HC |
chr4:28837847-28840939 | 20130731
Length = 282
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
Query: 65 KACREKMRRDQLNDRFLELSSILDPGRPSKMDKMGILSDAVRVVSQLREDAQKLRESTEN 124
KA REK+RRD+LN++FLEL +ILDP RP K DK IL D V+++ L KL++
Sbjct: 11 KADREKLRRDRLNEQFLELGNILDPDRP-KNDKATILGDTVQLLKDLSSQVSKLKDEYTM 69
Query: 125 LQGKINELKAEKNELRDEKQQLRAE 149
L + EL EKN+LR+EK L+++
Sbjct: 70 LNEESRELSQEKNDLREEKASLKSD 94
>Medtr4g075480.1 | transcription factor | HC |
chr4:28837847-28840939 | 20130731
Length = 282
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
Query: 65 KACREKMRRDQLNDRFLELSSILDPGRPSKMDKMGILSDAVRVVSQLREDAQKLRESTEN 124
KA REK+RRD+LN++FLEL +ILDP RP K DK IL D V+++ L KL++
Sbjct: 11 KADREKLRRDRLNEQFLELGNILDPDRP-KNDKATILGDTVQLLKDLSSQVSKLKDEYTM 69
Query: 125 LQGKINELKAEKNELRDEKQQLRAE 149
L + EL EKN+LR+EK L+++
Sbjct: 70 LNEESRELSQEKNDLREEKASLKSD 94
>Medtr4g075480.3 | transcription factor | HC |
chr4:28837847-28840939 | 20130731
Length = 310
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
Query: 65 KACREKMRRDQLNDRFLELSSILDPGRPSKMDKMGILSDAVRVVSQLREDAQKLRESTEN 124
KA REK+RRD+LN++FLEL +ILDP RP K DK IL D V+++ L KL++
Sbjct: 39 KADREKLRRDRLNEQFLELGNILDPDRP-KNDKATILGDTVQLLKDLSSQVSKLKDEYTM 97
Query: 125 LQGKINELKAEKNELRDEKQQLRAE 149
L + EL EKN+LR+EK L+++
Sbjct: 98 LNEESRELSQEKNDLREEKASLKSD 122
>Medtr1g032600.1 | transcription factor | HC |
chr1:11621022-11623661 | 20130731
Length = 355
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
Query: 65 KACREKMRRDQLNDRFLELSSILDPGRPSKMDKMGILSDAVRVVSQLREDAQKLRESTEN 124
KA REK+RRD+LND F +L +++DP RP + DK I+++ ++V+ + + +L+ ++
Sbjct: 82 KADREKIRRDRLNDHFHQLGTVIDPDRP-RNDKATIITETIQVLKDITSEVDRLKTEHKS 140
Query: 125 LQGKINELKAEKNELRDEKQQLRAE 149
L + EL EK ELR+EK L+++
Sbjct: 141 LSEESRELIQEKTELREEKASLKSD 165
>Medtr1g032600.2 | transcription factor | HC |
chr1:11621022-11623661 | 20130731
Length = 355
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
Query: 65 KACREKMRRDQLNDRFLELSSILDPGRPSKMDKMGILSDAVRVVSQLREDAQKLRESTEN 124
KA REK+RRD+LND F +L +++DP RP + DK I+++ ++V+ + + +L+ ++
Sbjct: 82 KADREKIRRDRLNDHFHQLGTVIDPDRP-RNDKATIITETIQVLKDITSEVDRLKTEHKS 140
Query: 125 LQGKINELKAEKNELRDEKQQLRAE 149
L + EL EK ELR+EK L+++
Sbjct: 141 LSEESRELIQEKTELREEKASLKSD 165
>Medtr4g108360.1 | BHLH transcription factor | HC |
chr4:44950290-44948517 | 20130731
Length = 246
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 59/99 (59%), Gaps = 1/99 (1%)
Query: 65 KACREKMRRDQLNDRFLELSSILDPGRPSKMDKMGILSDAVRVVSQLREDAQKLRESTEN 124
KA REKM+R+ LN+ FL+L++ LD P+ K IL +A R++ L Q L++ +
Sbjct: 55 KAEREKMKREHLNELFLDLANALDLSEPNN-GKASILIEASRLLKDLLCQIQSLKKENVS 113
Query: 125 LQGKINELKAEKNELRDEKQQLRAEKDIIEQKLKAISSQ 163
L + + + EKNEL++E L + + ++ +++A +Q
Sbjct: 114 LLSESHYVTMEKNELKEENSSLETQIEKLQGEIQARIAQ 152