Miyakogusa Predicted Gene

Lj6g3v2156530.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2156530.1 tr|G6FXY1|G6FXY1_9CYAN Photosystem II oxygen
evolving complex protein PsbP (Precursor)
OS=Fischerell,36.03,0.0000000001,PsbP,Photosystem II PsbP, oxygen
evolving complex; no description,Mog1/PsbP, alpha/beta/alpha
sandwi,CUFF.60711.1
         (170 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g111880.1 | photosystem II reaction center PsbP family pro...   226   8e-60
Medtr1g115410.1 | photosystem II reaction center PsbP family pro...    49   2e-06

>Medtr7g111880.1 | photosystem II reaction center PsbP family
           protein | HC | chr7:45966499-45965181 | 20130731
          Length = 250

 Score =  226 bits (576), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 110/143 (76%), Positives = 124/143 (86%), Gaps = 1/143 (0%)

Query: 17  AFAVPRRKAMSLILSSC-ILSKVGLAFAQQPPVFREYVDTFDGYSFKYPGNWIQVRGAGA 75
           AFAVPRRKA+SLILSS  ILS +G A AQQP VFREYVDTFDGYSF YP NWIQVRGAGA
Sbjct: 37  AFAVPRRKAISLILSSTYILSDIGTALAQQPRVFREYVDTFDGYSFNYPSNWIQVRGAGA 96

Query: 76  DIFFRDPYILDENLSLEIXXXXXXQYKSVEDLGPPQEAGKKVLKQYLTEFMSTRLGVRRE 135
           DIFFRDPYILDEN+S+E+      ++K+V+DLG PQ+AGKKVL QYLTEFMSTRLGV+RE
Sbjct: 97  DIFFRDPYILDENISVEVSSPSSSKFKTVQDLGSPQQAGKKVLDQYLTEFMSTRLGVKRE 156

Query: 136 ANVLSTSSRVADDGKLYYQVEVG 158
           +N+LSTS R+ADDGKLYYQVE  
Sbjct: 157 SNILSTSQRIADDGKLYYQVEAN 179


>Medtr1g115410.1 | photosystem II reaction center PsbP family
           protein | HC | chr1:52104806-52107080 | 20130731
          Length = 234

 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 11/127 (8%)

Query: 30  LSSCILSKVGLAFAQQPPVFREYVDTFDGYSFKYPGNWIQVRGAGADIFFRDPYILDENL 89
           L++ +L    L   + P  +R +VD  DGYS+ YP +W +      D  F+D Y+  +N+
Sbjct: 65  LTANLLPANSLLAEEIPDRYRSFVDYEDGYSYIYPSDWKEFDFRAHDSAFKDRYLQLQNV 124

Query: 90  SLEIXXXXXXQYKSVEDLGPPQEAGKKVLKQYLTEFMSTRLGVRREANVLSTSSRVADDG 149
            +        + K + DLGP +E         +T+ +  R     +   +        DG
Sbjct: 125 RVRF---IPTEKKDIRDLGPMEEV--------ITDLVKHRYTAPNQRPTIYDMQERTIDG 173

Query: 150 KLYYQVE 156
           K YY +E
Sbjct: 174 KHYYTME 180