Miyakogusa Predicted Gene

Lj6g3v2156520.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2156520.1 Non Characterized Hit- tr|I1JR38|I1JR38_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,77.36,0.000000000000001,seg,NULL; no description,Mog1/PsbP,
alpha/beta/alpha sandwich; Mog1p/PsbP-like,Mog1/PsbP/DUF1795,
al,CUFF.60710.1
         (261 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g111880.1 | photosystem II reaction center PsbP family pro...   348   4e-96
Medtr7g111860.1 | stem-loop-binding protein of 41 kDa protein B ...    86   3e-17
Medtr1g115410.1 | photosystem II reaction center PsbP family pro...    55   6e-08
Medtr7g023290.1 | oxygen-evolving complex/thylakoid lumenal 25.6...    52   4e-07
Medtr7g023290.2 | oxygen-evolving complex/thylakoid lumenal 25.6...    50   2e-06
Medtr3g096750.1 | PsbP domain protein | HC | chr3:44277737-44279...    48   8e-06

>Medtr7g111880.1 | photosystem II reaction center PsbP family
           protein | HC | chr7:45966499-45965181 | 20130731
          Length = 250

 Score =  348 bits (892), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 175/225 (77%), Positives = 192/225 (85%), Gaps = 3/225 (1%)

Query: 38  HLPDESDSDCADFSSKSKAFAVPRRKAMSLILSSC-ILSKVGLAFAQQPPVFREYVDTFD 96
           H P  S S   +  S   AFAVPRRKA+SLILSS  ILS +G A AQQP VFREYVDTFD
Sbjct: 21  HSPRCSISSTPN--SLKAAFAVPRRKAISLILSSTYILSDIGTALAQQPRVFREYVDTFD 78

Query: 97  GYSFKYPGNWIQVRGAGADIFFRDPYILDENLSLEIXXXXXXQYKSVEDLGPPQEAGKKV 156
           GYSF YP NWIQVRGAGADIFFRDPYILDEN+S+E+      ++K+V+DLG PQ+AGKKV
Sbjct: 79  GYSFNYPSNWIQVRGAGADIFFRDPYILDENISVEVSSPSSSKFKTVQDLGSPQQAGKKV 138

Query: 157 LKQYLTEFMSTRLGVRREANVLSTSSRVADDGKLYYQVEVNIKSYASNNELAVMPQDRVV 216
           L QYLTEFMSTRLGV+RE+N+LSTS R+ADDGKLYYQVE NIKSYASNNELAVMPQDRVV
Sbjct: 139 LDQYLTEFMSTRLGVKRESNILSTSQRIADDGKLYYQVEANIKSYASNNELAVMPQDRVV 198

Query: 217 RLEWDRRYLSVLGVENNQLYELRLQTPENVFQEEESDLRRVMDSF 261
           RLEWDRRYLSVLGVENNQLYELRLQ PENVF EEES+LR+VM SF
Sbjct: 199 RLEWDRRYLSVLGVENNQLYELRLQVPENVFLEEESELRQVMASF 243


>Medtr7g111860.1 | stem-loop-binding protein of 41 kDa protein B |
           HC | chr7:45955304-45952399 | 20130731
          Length = 378

 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 40/53 (75%), Positives = 44/53 (83%)

Query: 1   MLMMGGNRFTGVFLSRLFVKEGHQVTLCTRGEVPITQHLPDESDSDCADFSSK 53
           +L+MGG RF GVFLSR  VKEGHQVTL TRG+ PITQ LP ESD+D ADFSSK
Sbjct: 56  ILIMGGTRFIGVFLSRQLVKEGHQVTLFTRGKAPITQQLPGESDTDFADFSSK 108


>Medtr1g115410.1 | photosystem II reaction center PsbP family
           protein | HC | chr1:52104806-52107080 | 20130731
          Length = 234

 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 99/245 (40%), Gaps = 40/245 (16%)

Query: 27  LCTRGEVPITQHL------PDESDSDCADFSSKSKAFAVPRRKAMSLI--LSSCILSKVG 78
           L  +  +P + HL         ++  CA  ++ S      RR  +  I  L++ +L    
Sbjct: 15  LSHKLNLPHSNHLLRNTTTSSSNNVSCAMETTSSTERHCQRRPLLLGIGALTANLLPANS 74

Query: 79  LAFAQQPPVFREYVDTFDGYSFKYPGNWIQVRGAGADIFFRDPYILDENLSLEIXXXXXX 138
           L   + P  +R +VD  DGYS+ YP +W +      D  F+D Y+  +N+ +        
Sbjct: 75  LLAEEIPDRYRSFVDYEDGYSYIYPSDWKEFDFRAHDSAFKDRYLQLQNVRVRF---IPT 131

Query: 139 QYKSVEDLGPPQEAGKKVLKQYLTEFMSTRLGVRREANVLSTSSRVADDGKLYYQVE--V 196
           + K + DLGP +E         +T+ +  R     +   +        DGK YY +E  +
Sbjct: 132 EKKDIRDLGPMEEV--------ITDLVKHRYTAPNQRPTIYDMQERTIDGKHYYTMEYVL 183

Query: 197 NIKSYASNNELAVMPQDRVVRLEWDRRYLSVLGVENNQLYELRLQTPENVFQEEESDLRR 256
             ++YAS +                    + L + N + Y L +   E  +++    L+ 
Sbjct: 184 TSRNYASAS-------------------FTTLAIGNGRYYTLIVGANERRWKKVRDQLKV 224

Query: 257 VMDSF 261
           V DSF
Sbjct: 225 VADSF 229


>Medtr7g023290.1 | oxygen-evolving complex/thylakoid lumenal 25.6
           kDa protein | HC | chr7:7626263-7621406 | 20130731
          Length = 240

 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 88/220 (40%), Gaps = 32/220 (14%)

Query: 42  ESDSDCADFSSKSKAFAVPRRKAMSLILSSCILSKVGLAFAQQPPVFREYVDTFDGYSFK 101
           E  S   D S + +A A+     +  + +   +S      A     F+  VD  DGY F 
Sbjct: 48  ELSSSSTDISGRRQAIAIAATAPLVFLFNQSSISFA----ADNKSGFQPVVDRKDGYQFV 103

Query: 102 YPGNWIQVRGAGADIFFRDPYILDENLSLEIXXXXXXQYKSVEDLGPPQEAGKKVLKQYL 161
           YP  W +V   G D  F+D     EN+S+ +        + +++ G P++    ++K+ L
Sbjct: 104 YPFGWQEVVIEGQDKVFKDVIEPLENVSVTMIPTSK---QDIKEFGSPEQVAATLIKKVL 160

Query: 162 TEFMSTRLGVRREANVLSTSSRVADDGKLYYQVEVNIKSYASNNELAVMPQDRVVRLEWD 221
                      ++  ++  + R   DGK YYQ E           +A  P        + 
Sbjct: 161 AP-------PNQKTKIIQATER-EIDGKAYYQFEF----------VAQAP-------NYT 195

Query: 222 RRYLSVLGVENNQLYELRLQTPENVFQEEESDLRRVMDSF 261
           R  LS + + N + Y L     E  + + +  L  +++SF
Sbjct: 196 RHALSAVSIGNGKFYTLTTGANERRWGKMKDRLNTIVESF 235


>Medtr7g023290.2 | oxygen-evolving complex/thylakoid lumenal 25.6
           kDa protein | HC | chr7:7626267-7621406 | 20130731
          Length = 237

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 88/206 (42%), Gaps = 34/206 (16%)

Query: 61  RRKAMSLILSSCIL-----SKVGLAFAQQPPVFREYVDTFDGYSFKYPGNWIQVRGAGAD 115
           RR+A+++  ++ ++     S +  A A     F+  VD  DGY F YP  W +V   G D
Sbjct: 56  RRQAIAIAATAPLVFLFNQSSISFA-ADNKSGFQPVVDRKDGYQFVYPFGWQEVVIEGQD 114

Query: 116 IFFRDPYILDENLSLEIXXXXXXQYKSVEDLGPPQEAGKKVLKQYLTEFMSTRLGVRREA 175
             F+D     EN+S+ +        + +++ G P++    ++K+ L           ++ 
Sbjct: 115 KVFKDVIEPLENVSVTMIPTSK---QDIKEFGSPEQVAATLIKKVLAP-------PNQKT 164

Query: 176 NVLSTSSRVADDGKLYYQVEVNIKSYASNNELAVMPQDRVVRLEWDRRYLSVLGVENNQL 235
            ++  + R   DGK YYQ E           +A  P        + R  LS + + N + 
Sbjct: 165 KIIQATER-EIDGKAYYQFEF----------VAQAP-------NYTRHALSAVSIGNGKF 206

Query: 236 YELRLQTPENVFQEEESDLRRVMDSF 261
           Y L     E  + + +  L  +++SF
Sbjct: 207 YTLTTGANERRWGKMKDRLNTIVESF 232


>Medtr3g096750.1 | PsbP domain protein | HC | chr3:44277737-44279975
           | 20130731
          Length = 257

 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 71/165 (43%), Gaps = 12/165 (7%)

Query: 39  LPDESDSDCADFSSKSKAFAVPRRKAMSLILSSCILS---KVGLAFAQQPPVFREYVDTF 95
           +P  +   C   S K       R+  ++L+L+  + S    V L+  +     + Y D+ 
Sbjct: 49  IPKSTSPSCIHDSHKQMPCFGKRKLNLTLLLTPFLWSVFPNVLLSAQELITELQRYTDSN 108

Query: 96  DGYSFKYPGNWIQVRGAGADIFFRDPYILDENLSLEIXXXXXXQYKSVEDLGPPQEAGKK 155
           +G++ + P +W +V  AGA   F+DP     N+ + +      +  ++ D G PQ    K
Sbjct: 109 EGFTLQIPSSWTKVDKAGATALFQDPNKGSNNIGVVV---NPVRLTALGDFGTPQFVVDK 165

Query: 156 VLKQYLTEFMSTRLGVRREANVLSTSSRVADDGKLYYQVEVNIKS 200
           +L+         R    +EA V++ + R    G   Y+ E  I S
Sbjct: 166 LLQA------ERRKESTKEAEVVTVAERSGKGGLQVYEFEYKIDS 204