Miyakogusa Predicted Gene

Lj6g3v2085690.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2085690.1 tr|B9H210|B9H210_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_555484 PE=4
SV=1,56.99,8e-19,seg,NULL; DUF3774,Protein of unknown function
wound-induced,CUFF.60657.1
         (90 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g011690.1 | wound-responsive family protein | HC | chr2:29...    82   1e-16
Medtr2g089945.1 | wound-responsive family protein | HC | chr2:38...    47   4e-06

>Medtr2g011690.1 | wound-responsive family protein | HC |
          chr2:2911962-2912701 | 20130731
          Length = 89

 Score = 82.0 bits (201), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 46/94 (48%), Positives = 58/94 (61%), Gaps = 9/94 (9%)

Query: 1  MSLRYMSRVFYQTGVKM---LKDTGSKCGDSTMKSLKDXXXXXXXXXXXXXKQTWRFLSF 57
          MSLRY+ RV YQT ++    +KD  SKC DST+KSL+D               T    +F
Sbjct: 1  MSLRYIGRVLYQTAMRTFQGMKDQSSKC-DSTIKSLRDSTSSKQVKARVFSNNT----AF 55

Query: 58 FDSP-AFKAPNTDKAKQAEESLRLIMFLSCWGPN 90
           +S  AFK  N+DK K+AEESLR +M+LSCWGPN
Sbjct: 56 ENSSSAFKGSNSDKVKRAEESLRTVMYLSCWGPN 89


>Medtr2g089945.1 | wound-responsive family protein | HC |
          chr2:38031369-38032232 | 20130731
          Length = 91

 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/36 (61%), Positives = 26/36 (72%), Gaps = 3/36 (8%)

Query: 58 FDSPAF---KAPNTDKAKQAEESLRLIMFLSCWGPN 90
          F S +F   K  +  KAKQAEESLR +M+LSCWGPN
Sbjct: 56 FSSSSFLANKLKDEKKAKQAEESLRTVMYLSCWGPN 91