Miyakogusa Predicted Gene

Lj6g3v2082590.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2082590.1 Non Characterized Hit- tr|E0CVX6|E0CVX6_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,33.83,3e-18,
,CUFF.60653.1
         (303 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g011780.1 | heterogeneous nuclear U-like protein, putative...    89   5e-18

>Medtr2g011780.1 | heterogeneous nuclear U-like protein, putative |
           HC | chr2:2939655-2938053 | 20130731
          Length = 327

 Score = 89.0 bits (219), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 41/54 (75%), Positives = 48/54 (88%)

Query: 1   MIANYVLPKSKDMPHSDEFFDQVMFVELNRGESQKYLDQMKQDLSSPSNNDPST 54
           MIANYV+PKSKDMP+++E+FD V+FVELNR ESQKYLDQMKQD+ S  NN PST
Sbjct: 215 MIANYVVPKSKDMPYANEYFDMVLFVELNRDESQKYLDQMKQDIPSLPNNSPST 268