Miyakogusa Predicted Gene

Lj6g3v2080320.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2080320.1 tr|Q7G282|Q7G282_ORYSJ Expressed protein OS=Oryza
sativa subsp. japonica GN=LOC_Os10g36480 PE=2
SV=1,35.56,1e-17,seg,NULL; DUF1352,Protein of unknown function
DUF1352,CUFF.60637.1
         (180 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g075310.1 | transmembrane protein, putative | HC | chr3:34...   161   2e-40

>Medtr3g075310.1 | transmembrane protein, putative | HC |
           chr3:34279945-34284617 | 20130731
          Length = 179

 Score =  161 bits (408), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 99/180 (55%), Positives = 111/180 (61%), Gaps = 1/180 (0%)

Query: 1   MQHRNSSLGRPSGTDGSDYSYRMVVDSRYQLVAKGKKRLSLLFIIEALVLLIGVVFAFLP 60
           MQ R S LGRPSGTDGSDYSYRMVVDSRYQLVAKGKKRLS+LF IEAL LL GV+FAFLP
Sbjct: 1   MQQRKSPLGRPSGTDGSDYSYRMVVDSRYQLVAKGKKRLSVLFTIEALFLLTGVIFAFLP 60

Query: 61  GREQHIPNTAXXXXXXXXXXXXXXADIXXXXXXXXXXXFYAIASSIATLQLIVSLAMWHS 120
           G ++  PN                ADI            YA+ SS+A L    +LA  +S
Sbjct: 61  GTKEDTPNRVAISSVIASVVLLIIADIGRRRSRSSLLRLYAVLSSLALLLFTATLANRYS 120

Query: 121 LPKAIWDFGFSETRRFDATGFTGLQAGXXXXXXTFSLFKIWTIKAVLSLIFNMSPPKKSS 180
           L K I  F    T  FD   F  LQ G      TFSLFKI TIKAV+ L+FNM+PPKK+S
Sbjct: 121 LLKVIQYFSNRGTSSFDV-DFPSLQTGLLVYILTFSLFKISTIKAVVFLLFNMTPPKKAS 179