Miyakogusa Predicted Gene

Lj6g3v2078150.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2078150.1 Non Characterized Hit- tr|D7T3E1|D7T3E1_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,68.57,5e-19,
,CUFF.60623.1
         (154 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g012520.1 | Novel GRP family | HC | chr2:3114814-3115913 |...    89   2e-18
Medtr4g090520.1 | Novel GRP family | HC | chr4:35892107-35891070...    82   3e-16

>Medtr2g012520.1 | Novel GRP family | HC | chr2:3114814-3115913 |
           20130731
          Length = 159

 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/62 (70%), Positives = 47/62 (75%)

Query: 93  RSKNGVVRSTVVCKDKGPCFQKKVTCPAKCFSSFSRSXXXXXXXXXXXXCTIDCKKKCIA 152
            SKNG+VR TVVCKDKGPC+QKK+TCPAKCFSSFSRS            CTIDCKKKC A
Sbjct: 98  HSKNGIVRPTVVCKDKGPCYQKKLTCPAKCFSSFSRSGKGYGGGGGGGGCTIDCKKKCSA 157

Query: 153 YC 154
           YC
Sbjct: 158 YC 159


>Medtr4g090520.1 | Novel GRP family | HC | chr4:35892107-35891070 |
           20130731
          Length = 155

 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 40/62 (64%), Positives = 45/62 (72%)

Query: 93  RSKNGVVRSTVVCKDKGPCFQKKVTCPAKCFSSFSRSXXXXXXXXXXXXCTIDCKKKCIA 152
            S NGV+R TVVCKD+GPC+QKKVTCPA+CF+SFSRS            CTIDCKKKC A
Sbjct: 94  HSTNGVIRPTVVCKDRGPCYQKKVTCPARCFTSFSRSGKGYGGGGGGGGCTIDCKKKCTA 153

Query: 153 YC 154
            C
Sbjct: 154 SC 155