Miyakogusa Predicted Gene
- Lj6g3v2078010.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v2078010.1 Non Characterized Hit- tr|C4J007|C4J007_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,31.03,3e-18,SUBFAMILY
NOT NAMED,NULL; FALZ-RELATED BROMODOMAIN-CONTAINING PROTEINS,NULL;
Bromodomain,Bromodomain,CUFF.60618.1
(477 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr2g012600.1 | bromodomain protein | LC | chr2:3171410-316116... 437 e-122
Medtr4g090460.2 | bromodomain protein | HC | chr4:35864381-35869... 332 5e-91
Medtr4g090460.1 | bromodomain protein | HC | chr4:35864381-35869... 331 7e-91
Medtr2g060760.1 | DNA-binding bromodomain protein, putative | HC... 78 2e-14
Medtr2g451410.1 | hypothetical protein | LC | chr2:22844831-2284... 51 2e-06
>Medtr2g012600.1 | bromodomain protein | LC | chr2:3171410-3161169 |
20130731
Length = 747
Score = 437 bits (1124), Expect = e-122, Method: Compositional matrix adjust.
Identities = 245/368 (66%), Positives = 278/368 (75%), Gaps = 10/368 (2%)
Query: 115 VENGSGSPASHEPSQKLERVESSNKELSKDGLSAGSFTHETRTTNWSPERQVPA---EDT 171
+NG SP SH PSQKL RVESS KE SK+GLS GSFT ETRT NWSPE QVPA +D
Sbjct: 384 CQNGLESPVSHLPSQKLMRVESSAKETSKEGLSVGSFTQETRT-NWSPESQVPAASSDDN 442
Query: 172 ETKPEASHSSEQVKVLNVDNLTHTIYEGQVGSLTTXXXXXXXXDCGRNIKEAASMGESDL 231
ETKPE S S+EQ KVLN DNL T+YE QVG DCGRNI EAAS+ ESDL
Sbjct: 443 ETKPEVSQSTEQAKVLNGDNLELTLYEIQVGCRKKRRGKRKRKDCGRNIMEAASLEESDL 502
Query: 232 LDSADVVSLCKESSTSNYDEVAKSSG-VDDQ-IKNLKKTGAGEIMEMLDSIFETQGASAF 289
LD+ DV+S KESSTSN +VAKSS VD++ KN KK A +++++LDSIFET+GASAF
Sbjct: 503 LDAVDVMSWRKESSTSNCGDVAKSSADVDNKKSKNPKKHSAEDMIKILDSIFETEGASAF 562
Query: 290 RRRLDSQKRGKYKKMIRRHMDFDTIRSRISDKTIKSARELFRDLLLLANNALVFYSKSTR 349
RRRLD QKRGKYKKMI++HMDFDTIRSRIS +TI+S REL+RDLLLL NNALVFYSK T
Sbjct: 563 RRRLDGQKRGKYKKMIQKHMDFDTIRSRISSRTIESTRELYRDLLLLTNNALVFYSKITH 622
Query: 350 VYKSAMLLRDLVTKKMRETSKGISSSKVTTTSEANESSKLPVQ-NPRVKPRSVRPGNRKI 408
YK+A+LLR +V KKMRE+ KG +SS T E NES KLPV N VKPRSVRPGNRKI
Sbjct: 623 EYKTALLLRGIVAKKMRESLKGSTSSSKKVT-EPNESMKLPVHHNLHVKPRSVRPGNRKI 681
Query: 409 VAKATGGNNSASGVSDGAKKPCKVDSPSPVESLTVKKKAFGRPKKVGRGTAGPKPATPLK 468
+AKA GG+NSAS S GAKKP K DS VESL V KKAFGR KKV ++ K ATP+K
Sbjct: 682 IAKAVGGDNSAS--SQGAKKPIKADSSPSVESLNVTKKAFGRQKKVEPVSSSQKTATPVK 739
Query: 469 GKKRVRTK 476
G+KRVRTK
Sbjct: 740 GRKRVRTK 747
Score = 224 bits (572), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 118/183 (64%), Positives = 140/183 (76%), Gaps = 7/183 (3%)
Query: 8 GKWGTWEELILGAAVLRHGTQDWKVVAGELRVRTPCPDAFTPENCEAKYEEFLKRYSGST 67
G WGTWEEL+LG AV R+GT+DW VVAGELR R CP FTPE C+AK+E+ +RYSGST
Sbjct: 2 GGWGTWEELLLGGAVFRYGTRDWNVVAGELRERIDCPIPFTPEVCKAKFEDLQQRYSGST 61
Query: 68 AW-YEELKKARIAELKRALEQSDKKIGALESKLESLKAEKNEKIDDRHVENGSGSPASHE 126
+ YEEL+K R+ ELK+A+E+S IG+L+SK+E L+AEKNE+ DD ENG SPASH
Sbjct: 62 DFLYEELRKRRVEELKKAIERSGDSIGSLKSKIEDLEAEKNEEKDD--CENGLESPASHL 119
Query: 127 PSQKLERVESSNKELSKDGLSAGSFTHETRTTNWSPERQV---PAEDTETKPEASHSSEQ 183
P QKLERV+SS KE SKDGLSAGSFTHETR TNWSPE QV A++ ETK E +EQ
Sbjct: 120 PLQKLERVKSSTKETSKDGLSAGSFTHETR-TNWSPESQVSAASADNNETKLEVLQPTEQ 178
Query: 184 VKV 186
KV
Sbjct: 179 AKV 181
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/94 (70%), Positives = 71/94 (75%), Gaps = 6/94 (6%)
Query: 96 ESKLESLKAEKNEKIDDRHVENGSGSPASHEPSQKLERVESSNKELSKDGLSAGSFTHET 155
+SKLE L+AEKNEK D ENG SP SH PSQKLERV+SS KE SKDGLS GSFTHET
Sbjct: 183 QSKLEVLEAEKNEKKHD--CENGIESPVSHVPSQKLERVKSSTKETSKDGLSTGSFTHET 240
Query: 156 RTTNWSPERQVP---AEDTETKPEASHSSEQVKV 186
R TNWSPE QVP A+D ETKPE S+EQ KV
Sbjct: 241 R-TNWSPESQVPAASADDNETKPEVLQSTEQAKV 273
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 74/110 (67%), Gaps = 6/110 (5%)
Query: 80 ELKRALEQSDKKIGALESKLESLKAEKNEKIDDRHVENGSGSPASHEPSQKLERVESSNK 139
E K + QS ++ +SKLE L+AEKNEK D ENG S SH PSQKLERV+S K
Sbjct: 259 ETKPEVLQSTEQAKVPQSKLEILEAEKNEKKHD--CENGLESLVSHAPSQKLERVKSCTK 316
Query: 140 ELSKDGLSAGSFTHETRTTNWSPERQVP---AEDTETKPEASHSSEQVKV 186
E SKDGLSA SFT +TR T WS E Q+P A+D+ETKPE S+EQ KV
Sbjct: 317 ETSKDGLSARSFTRKTR-TKWSHESQIPAASADDSETKPEVLQSTEQDKV 365
>Medtr4g090460.2 | bromodomain protein | HC | chr4:35864381-35869389
| 20130731
Length = 391
Score = 332 bits (851), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 201/381 (52%), Positives = 245/381 (64%), Gaps = 36/381 (9%)
Query: 109 KIDDRHVENGSGSPASHEPSQKLERVESSNKELSKDGLSAGSFTHETRTTNWSPERQVPA 168
K DD HV+N S P SH PSQKLERVESS KE SKDGLSAGSFTH+T+T NW E Q+PA
Sbjct: 33 KRDDCHVDNESVGPESHVPSQKLERVESSTKETSKDGLSAGSFTHQTQT-NWFHECQIPA 91
Query: 169 ---EDTETKPEASHSSEQVKVLNVDNLTHTIYEGQVGSLTTXXXXXXXXDCGRNIKEAAS 225
ED E P S S+E KVLNVD LT T+YEGQ G DC RNI EA S
Sbjct: 92 MSSEDMEITPGVSGSTEHEKVLNVDKLTETVYEGQGGCFKKRRGKRKRKDCARNINEA-S 150
Query: 226 MGESDLLDSADVVSLCKESSTSNYDEVAKSSGVDDQIKNLKKTGAGEIMEMLDSIFETQG 285
+ ESD + VVS KESSTSN EV KSSGV ++ NLKK G ++M +LDSI E +G
Sbjct: 151 VRESDF---SIVVSRLKESSTSNCGEVVKSSGVTEENTNLKKDGTKDLMAILDSILEIKG 207
Query: 286 ASAFRRRLDSQKRGKYKKMIRRHMDFDTIRSRISDKTIKSARELFRDLLLLANNALVFYS 345
AS F R+ DSQKR +YK++I+RHMDFDTIRSRIS+KTI S +LFRD+ LL NAL+FYS
Sbjct: 208 ASCFCRKHDSQKRQRYKQLIQRHMDFDTIRSRISNKTIDSVVQLFRDMFLLTTNALMFYS 267
Query: 346 KSTRVYKSAMLLRDLVTKKMRETSKGISSSKVTTTSEANESSKLPVQNPRVKPRSVRPGN 405
K+TR YKSA+L+RD+V +K+ E + + S V T P +K SVRP N
Sbjct: 268 KNTRQYKSALLMRDIVKEKLTENRRNVIHSNVDTV----------CATPSLKVPSVRPCN 317
Query: 406 RKI-VAKATGGNNSASGVSDGAKKP----CKVDSPSPVESLTVKKKAFGRPKKVGRGTAG 460
+KI AKA G++ ASGVS+ AKKP K +S S V++L +KK G K
Sbjct: 318 QKINAAKAADGSDPASGVSNKAKKPRTGGSKENSLSSVKTLHIKKAVGGSKKH------- 370
Query: 461 PKPATP-----LKGKKRVRTK 476
+P+TP +K KKR RT+
Sbjct: 371 -EPSTPNLMKEMKEKKRRRTR 390
>Medtr4g090460.1 | bromodomain protein | HC | chr4:35864381-35869339
| 20130731
Length = 557
Score = 331 bits (849), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 201/381 (52%), Positives = 245/381 (64%), Gaps = 36/381 (9%)
Query: 109 KIDDRHVENGSGSPASHEPSQKLERVESSNKELSKDGLSAGSFTHETRTTNWSPERQVPA 168
K DD HV+N S P SH PSQKLERVESS KE SKDGLSAGSFTH+T+T NW E Q+PA
Sbjct: 199 KRDDCHVDNESVGPESHVPSQKLERVESSTKETSKDGLSAGSFTHQTQT-NWFHECQIPA 257
Query: 169 ---EDTETKPEASHSSEQVKVLNVDNLTHTIYEGQVGSLTTXXXXXXXXDCGRNIKEAAS 225
ED E P S S+E KVLNVD LT T+YEGQ G DC RNI EA S
Sbjct: 258 MSSEDMEITPGVSGSTEHEKVLNVDKLTETVYEGQGGCFKKRRGKRKRKDCARNINEA-S 316
Query: 226 MGESDLLDSADVVSLCKESSTSNYDEVAKSSGVDDQIKNLKKTGAGEIMEMLDSIFETQG 285
+ ESD + VVS KESSTSN EV KSSGV ++ NLKK G ++M +LDSI E +G
Sbjct: 317 VRESDF---SIVVSRLKESSTSNCGEVVKSSGVTEENTNLKKDGTKDLMAILDSILEIKG 373
Query: 286 ASAFRRRLDSQKRGKYKKMIRRHMDFDTIRSRISDKTIKSARELFRDLLLLANNALVFYS 345
AS F R+ DSQKR +YK++I+RHMDFDTIRSRIS+KTI S +LFRD+ LL NAL+FYS
Sbjct: 374 ASCFCRKHDSQKRQRYKQLIQRHMDFDTIRSRISNKTIDSVVQLFRDMFLLTTNALMFYS 433
Query: 346 KSTRVYKSAMLLRDLVTKKMRETSKGISSSKVTTTSEANESSKLPVQNPRVKPRSVRPGN 405
K+TR YKSA+L+RD+V +K+ E + + S V T P +K SVRP N
Sbjct: 434 KNTRQYKSALLMRDIVKEKLTENRRNVIHSNVDTV----------CATPSLKVPSVRPCN 483
Query: 406 RKI-VAKATGGNNSASGVSDGAKKP----CKVDSPSPVESLTVKKKAFGRPKKVGRGTAG 460
+KI AKA G++ ASGVS+ AKKP K +S S V++L +KK G K
Sbjct: 484 QKINAAKAADGSDPASGVSNKAKKPRTGGSKENSLSSVKTLHIKKAVGGSKKH------- 536
Query: 461 PKPATP-----LKGKKRVRTK 476
+P+TP +K KKR RT+
Sbjct: 537 -EPSTPNLMKEMKEKKRRRTR 556
Score = 251 bits (642), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 131/189 (69%), Positives = 144/189 (76%), Gaps = 4/189 (2%)
Query: 10 WGTWEELILGAAVLRHGTQDWKVVAGELRVRTPCPDAFTPENCEAKYEEFLKRYSGSTAW 69
WGTWEEL+LG AV+RHGT DW VVA ELR RT P A TPE C+AKYEE +RYSG TAW
Sbjct: 9 WGTWEELLLGGAVIRHGTGDWSVVAAELRGRTHSPSAITPEVCKAKYEELQQRYSGCTAW 68
Query: 70 YEELKKARIAELKRALEQSDKKIGALESKLESLKAEKNEKIDDRHVENGSGSPASHEPSQ 129
YEELKK R+AELKRALE+S+ IG+LESKLE LKA+KNEK DD HV+N S P PSQ
Sbjct: 69 YEELKKRRVAELKRALEKSEDSIGSLESKLEFLKADKNEKRDDCHVDNNSVGPELDVPSQ 128
Query: 130 KLERVESSNKELSKDGLSAGSFTHETRTTNWSPERQVPA---EDTETKPEASHSSEQVKV 186
KLERVESS+KELSKDGLSAGSFTH+T TNWS E QVPA ED E S S E KV
Sbjct: 129 KLERVESSSKELSKDGLSAGSFTHQT-DTNWSHECQVPAMSSEDMEISAGVSGSIEHEKV 187
Query: 187 LNVDNLTHT 195
LN+D LT T
Sbjct: 188 LNIDKLTDT 196
>Medtr2g060760.1 | DNA-binding bromodomain protein, putative | HC |
chr2:25780657-25773055 | 20130731
Length = 719
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 66/123 (53%), Gaps = 24/123 (19%)
Query: 10 WGTWEELILGAAVLRHGTQDWKVVAGELRVRTPCPDAF-TPENCEAKYEEFLKRY----- 63
WGTWEEL+L +AV RHG +DW +A E++ RT T +CE K+ + +R+
Sbjct: 21 WGTWEELLLASAVDRHGFKDWDTIAMEVQSRTNRTSLLATAHHCEQKFHDLNRRFKDDVP 80
Query: 64 ---------------SGSTAWYEELKKARIAELKRALEQSDKKIGALE---SKLESLKAE 105
S W ++L+K R+AEL+R ++ SD I +L+ KLE KA+
Sbjct: 81 PPQQNGDVSAVTAEDSDHVPWLDKLRKQRVAELRRDVQLSDVSILSLQLQVKKLEDEKAK 140
Query: 106 KNE 108
+NE
Sbjct: 141 ENE 143
>Medtr2g451410.1 | hypothetical protein | LC |
chr2:22844831-22844141 | 20130731
Length = 81
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 33/44 (75%), Gaps = 2/44 (4%)
Query: 94 ALESKLESLKAEKNEKIDDRHVENGSGSPASHEPSQKLERVESS 137
+ +SK+E LKAEKNE+ DD ENG SP SH PSQKLERV+ S
Sbjct: 20 SFKSKIEDLKAEKNEEKDD--CENGLKSPTSHLPSQKLERVKPS 61