Miyakogusa Predicted Gene

Lj6g3v2055770.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2055770.1 tr|B9N763|B9N763_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_785648 PE=4
SV=1,47.79,7e-19,seg,NULL,CUFF.60616.1
         (153 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g090440.1 | transmembrane protein, putative | HC | chr4:35...   160   3e-40
Medtr2g012780.1 | transmembrane protein, putative | HC | chr2:32...   141   3e-34
Medtr2g005740.2 | transmembrane protein, putative | HC | chr2:29...    79   2e-15
Medtr2g005740.1 | transmembrane protein, putative | HC | chr2:29...    79   2e-15

>Medtr4g090440.1 | transmembrane protein, putative | HC |
           chr4:35836726-35840521 | 20130731
          Length = 149

 Score =  160 bits (406), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 92/156 (58%), Positives = 107/156 (68%), Gaps = 10/156 (6%)

Query: 1   MGHHNNGGSWPPIGAPLNVRADQLQHWTSNFDSTVNAVSFGFVATAILISMFLVMAIFER 60
           M   ++   WPP+ +PL++  D+  HWT NFDS+VNAVSFGFVATAILISMFLVMAIFER
Sbjct: 1   MTVEDHSNEWPPMASPLDLHRDE--HWT-NFDSSVNAVSFGFVATAILISMFLVMAIFER 57

Query: 61  FLXXXXXXXX---XXXXXAVESQVALGGKLGHSSPKMNGYGSWVSVLMPGEETPSFIAHP 117
           FL                 VESQ++  GKL H SPKM  Y + VSVLMPG+  P+FIAH 
Sbjct: 58  FLRPISPPMSPPGRRSQRDVESQMSSYGKLSHPSPKMTVYSTEVSVLMPGDVIPTFIAH- 116

Query: 118 APAPCSPERISWPSHHQNKTLPCSTSNIIPPNIDQV 153
            PAPC PERI WPSH  N TLPCSTSN   PNI++V
Sbjct: 117 -PAPCCPERIVWPSHQHN-TLPCSTSNTR-PNINEV 149


>Medtr2g012780.1 | transmembrane protein, putative | HC |
           chr2:3286347-3283002 | 20130731
          Length = 171

 Score =  141 bits (355), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 93/167 (55%), Positives = 108/167 (64%), Gaps = 20/167 (11%)

Query: 3   HHNNGGSWPPIGAPLNVRADQLQH------WTSNFDSTVN----AVSFGFVATAILISMF 52
            H     W PIGAPLNV+ D  Q       W++N  +  +    AVSFGFVATA+LISMF
Sbjct: 9   EHVVENGWSPIGAPLNVQRDDHQQQPQQQHWSNNNSNNFDSSVNAVSFGFVATAVLISMF 68

Query: 53  LVMAIFERFLXXXXXXX---XXXXXXAVESQVALGGKLGH-SSPKMNGYGSWVSVLMPGE 108
           L+MAIFERFL                AVES +    KLGH  SPKMN + SWVSVLMPG+
Sbjct: 69  LLMAIFERFLAPSSQALFPNLRRNRRAVESPIR---KLGHHQSPKMNIFTSWVSVLMPGD 125

Query: 109 ETPSFIAHPAPAPCSPERISWPSHHQNKTLPCSTSNIIPP--NIDQV 153
           E P+FIAHPAP PC PERISWPS HQ+ TL CSTSN++P   NI+QV
Sbjct: 126 EIPTFIAHPAPIPCCPERISWPS-HQHTTLSCSTSNVLPSNNNINQV 171


>Medtr2g005740.2 | transmembrane protein, putative | HC |
           chr2:293644-292533 | 20130731
          Length = 161

 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/118 (40%), Positives = 65/118 (55%), Gaps = 5/118 (4%)

Query: 22  DQLQHWTSNFDSTVNAVSFGFVATAILISMFLVMAIFERFLXXXXXXXXXXXX---XAVE 78
           D+   W S F ++++A+SFGFVATAILISMFL+MAIFE                     E
Sbjct: 40  DEEGPWKS-FGTSMSAISFGFVATAILISMFLIMAIFEHLFKPTQQFSSTPESMLPTYQE 98

Query: 79  SQVALGGKLGHSSPKMNG-YGSWVSVLMPGEETPSFIAHPAPAPCSPERISWPSHHQN 135
                  K G++   ++  Y   +SVLMPG++ P++IA PAP PC  E   WPSH  +
Sbjct: 99  HHSLPTTKQGNAQSVLSSSYACDLSVLMPGQQYPTYIAQPAPLPCPREGAYWPSHQHH 156


>Medtr2g005740.1 | transmembrane protein, putative | HC |
           chr2:293284-292590 | 20130731
          Length = 151

 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/118 (40%), Positives = 65/118 (55%), Gaps = 5/118 (4%)

Query: 22  DQLQHWTSNFDSTVNAVSFGFVATAILISMFLVMAIFERFLXXXXXXXXXXXX---XAVE 78
           D+   W S F ++++A+SFGFVATAILISMFL+MAIFE                     E
Sbjct: 30  DEEGPWKS-FGTSMSAISFGFVATAILISMFLIMAIFEHLFKPTQQFSSTPESMLPTYQE 88

Query: 79  SQVALGGKLGHSSPKMNG-YGSWVSVLMPGEETPSFIAHPAPAPCSPERISWPSHHQN 135
                  K G++   ++  Y   +SVLMPG++ P++IA PAP PC  E   WPSH  +
Sbjct: 89  HHSLPTTKQGNAQSVLSSSYACDLSVLMPGQQYPTYIAQPAPLPCPREGAYWPSHQHH 146