Miyakogusa Predicted Gene
- Lj6g3v2043310.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v2043310.1 Non Characterized Hit- tr|I1M273|I1M273_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,87.65,0,seg,NULL,CUFF.60581.1
(1008 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g088965.1 | mediator of RNA polymerase II transcription su... 1448 0.0
Medtr2g013160.1 | mediator of RNA polymerase II transcription su... 1035 0.0
Medtr2g013190.1 | mediator of RNA polymerase II transcription su... 489 e-138
Medtr1g072070.1 | mediator of RNA polymerase II transcription su... 269 1e-71
Medtr1g072060.1 | mediator of RNA polymerase II transcription su... 200 7e-51
Medtr2g013180.1 | mediator of RNA polymerase II transcription su... 180 7e-45
Medtr4g010370.1 | mediator of RNA polymerase II transcription su... 143 1e-33
Medtr3g057920.1 | hypothetical protein | LC | chr3:22926789-2292... 91 4e-18
Medtr3g057930.1 | transmembrane protein, putative | LC | chr3:22... 84 9e-16
>Medtr4g088965.1 | mediator of RNA polymerase II transcription subunit
16 | HC | chr4:35573049-35558652 | 20130731
Length = 1245
Score = 1448 bits (3749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 733/983 (74%), Positives = 797/983 (81%), Gaps = 11/983 (1%)
Query: 32 AVAVTGDQD---SEKPPPPVEDDPMEQDTATPATIFSIRLKQPRSNLIHKMSVPEICRNF 88
+V+V DQ+ +E+ P+ D PME+D+ PAT+F+IRL+Q ++NL+HKMSVPE+CRNF
Sbjct: 35 SVSVVEDQEVVVAEENKSPI-DQPMEEDSVNPATVFTIRLRQSKANLMHKMSVPELCRNF 93
Query: 89 SAVSWCGKLNAIACASETCARIPSSTANPPFWIPIHIVIPERPTECAVFNVIADSPRDSV 148
SAVSWCGKLNAIACA+ETCARIPSSTANPPFWIPIHIVIPERPTECAVFNVIADSPRDSV
Sbjct: 94 SAVSWCGKLNAIACAAETCARIPSSTANPPFWIPIHIVIPERPTECAVFNVIADSPRDSV 153
Query: 149 QFIEWSPTCCPRALLIANFHGRVTVWTQPSQGPANVVLDTSCWLREHEWRQDIAVVTKWL 208
QFIEWSPT CPRALLIANFHGRVT+WTQPSQGPAN+V D SCW REHEWRQDIAV TKWL
Sbjct: 154 QFIEWSPTSCPRALLIANFHGRVTIWTQPSQGPANLVRDASCWRREHEWRQDIAVATKWL 213
Query: 209 SGVSLYRWHXXXXXXXXXXXXMFEEKFLSQQSQTSARWPNFLCVCSVFSSGSVQLHWSQW 268
SGVS YRW FEEKFLSQQSQTSARWPNFLCVCSVFSSGSVQLHWSQW
Sbjct: 214 SGVSPYRWLSSKSSATPDSKLTFEEKFLSQQSQTSARWPNFLCVCSVFSSGSVQLHWSQW 273
Query: 269 PPSQNATPRKWFCTSKGLLGCGPSGIMAGDAIITDSGAMHVAGVPIVNPSTIVVWEVMPG 328
PP+Q + +WF TSKGLLGCGPSGIMAGDAIITDSGAMHVAGVPIVNPSTIVVWEV PG
Sbjct: 274 PPNQKDSTPRWFHTSKGLLGCGPSGIMAGDAIITDSGAMHVAGVPIVNPSTIVVWEVTPG 333
Query: 329 PGNGFQVTPKTSINNGVPPLISPSWSGFAPLAAYLFSWQDYLLSEEKQGRNQTDQNLGDS 388
PGNGFQ P TS +GVPP I P+W GFAPLAAYLF WQD+LLS KQG+ T++N+GDS
Sbjct: 334 PGNGFQSCPMTSTKSGVPPHIPPNWDGFAPLAAYLFCWQDHLLSLAKQGKKLTEKNIGDS 393
Query: 389 IPLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPY 448
+PL+CSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTR GSVIAVVIVEGQYMSPY
Sbjct: 394 VPLYCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRAGSVIAVVIVEGQYMSPY 453
Query: 449 DPDEGPSITGWRVQRWESSLQHVVLHPIFGNPTSSMGGQPPMQTVWQSKVDLSIPPTNDF 508
DPDEGP+ITGWRVQRWESSL+ VVLHPIFGNPTSSMGGQPPMQTVWQSKVDLSI PT+DF
Sbjct: 454 DPDEGPTITGWRVQRWESSLEQVVLHPIFGNPTSSMGGQPPMQTVWQSKVDLSILPTDDF 513
Query: 509 KNHQAPAVGMNADGQKVSMSCFDKSKGVNFDPFDLPSDVRTLARVVYSAHGGEIAIAFLR 568
+NH++P +GM D QKVS DKSK VNFDPFDLPSDVRTLAR+VYSAHGGEIAIAFLR
Sbjct: 514 RNHRSPTIGMATDVQKVSELISDKSKRVNFDPFDLPSDVRTLARIVYSAHGGEIAIAFLR 573
Query: 569 GGVHIFSGPNFAPVDNYQINVGSAIXXXXXXXXXXXXXXVWHDTSKDQTILKIIRVLPPA 628
GGVHIFSGPNF VDNYQI VGSAI VWHDT + TILKIIRVLPP
Sbjct: 574 GGVHIFSGPNFEQVDNYQITVGSAIAAPAFSSTSCCSASVWHDTINNYTILKIIRVLPPP 633
Query: 629 VPTSQVKANSSTWERAIAERFWWSLLVGVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADF 688
VP SQ KANSSTWERAIAERFWWSLLVGVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADF
Sbjct: 634 VPISQAKANSSTWERAIAERFWWSLLVGVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADF 693
Query: 689 HSLPTAEHRQQYCPCLDRIKCRLLEGSNAQDVRAMVLDMQARLLLDMLGKGIESALINPS 748
HSLP+ +HRQQY P LDRIKCRLLEGSNAQ+VRAMVLDMQARLLLDMLG+GIESALI+P+
Sbjct: 694 HSLPSVQHRQQYGPSLDRIKCRLLEGSNAQEVRAMVLDMQARLLLDMLGRGIESALIDPT 753
Query: 749 ALVPDPWQVSGETLSSIDPEEVAVEPALVPFIQAYVDSVLDLASHFITRLRRYASFCRTL 808
VP+ WQ SGETLS+ID E +AVEPALVP +QAYVD++LDLASHFITRLRRYASFCRTL
Sbjct: 754 QFVPELWQASGETLSNIDSETMAVEPALVPCVQAYVDAILDLASHFITRLRRYASFCRTL 813
Query: 809 ASHAVTAGTGSNRNMVASPTQNSATSAXXXXXXXXXXXXXXXXXXXAWVHGAIAKISSTP 868
ASHAVTAGTGSNRNMVASPTQ+SAT A WV GAIAKIS+T
Sbjct: 814 ASHAVTAGTGSNRNMVASPTQSSATPATSQGGQNGSTSSMGTVQLQTWVQGAIAKISNTT 873
Query: 869 DGVXXXXXXXXXXXXXXFVPISINTGTFPGTPAVRLIGDXXXXXXXXXXXXXXXXXXXTQ 928
+G F+PISINTGTFPGTPAVRLIGD TQ
Sbjct: 874 EG-GSNPTPNPISGPSSFMPISINTGTFPGTPAVRLIGDCQFLHRLCQLLLFCFFFRRTQ 932
Query: 929 LPRYMSGSQRSADTNAQKSQPNASVPGKVEENAKPLSNM----DGQTGRVGQLVXXXXXX 984
+PRYM + R+ D+N QKS NA GKVEE AKP+S + DG TGR GQL+
Sbjct: 933 IPRYMGAANRTNDSNTQKS--NAPASGKVEEIAKPVSAVAKSEDGLTGRAGQLISGPKGG 990
Query: 985 XXXXXXXXRIGTGNAGQGYTFEE 1007
R+G+GNAGQGYTFEE
Sbjct: 991 EEAPSGRSRLGSGNAGQGYTFEE 1013
>Medtr2g013160.1 | mediator of RNA polymerase II transcription subunit
16 | HC | chr2:3502342-3493885 | 20130731
Length = 1086
Score = 1035 bits (2677), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 556/962 (57%), Positives = 634/962 (65%), Gaps = 120/962 (12%)
Query: 48 VEDDPMEQDTATPATIFSIRLKQPRSNLIHKMSVPEICR-NFSAVSWCGKLNAIACASET 106
V D ME++ T+F I L+Q S +HK++V E R NFSAV+WC KLN IACA+ET
Sbjct: 17 VNDPMMEEEEVEAGTVFDISLEQSPSTSLHKITVHESMRSNFSAVAWCAKLNVIACATET 76
Query: 107 CAR-IPSSTANPPFWIPIHIVIPERPTECAVFNVIADSPRDSVQFIEWSPTCCPRALLIA 165
C IP S+ NP FWIPIHIVIPERPTE A FNV+ADS DSVQ I+WSP CCPRALLIA
Sbjct: 77 CVNGIPRSSVNPWFWIPIHIVIPERPTEIAAFNVVADSSLDSVQSIQWSPICCPRALLIA 136
Query: 166 NFHGRVTVWTQPSQGPANVVLDTSCWLREHEWRQDIAVVTKWLSGVSLYRWHXXXXXXXX 225
NF GRVT+WTQPS+GP N+V+DT+CW REHEWRQ+ AVVTKWLSG S YRW
Sbjct: 137 NFQGRVTIWTQPSRGPPNLVIDTNCWQREHEWRQETAVVTKWLSGASPYRWLSSKASAPT 196
Query: 226 XXXXMFEEKFLSQQSQTSARWPNFLCVCSVFSSGSVQLHWSQWPPSQNATPRKWFCTSKG 285
F EKF+SQQ +TSARWP FLCVCSV SG VQLHWSQ PP+QNATP KWFCTSKG
Sbjct: 197 DSKSTFVEKFISQQPETSARWPKFLCVCSVSQSGKVQLHWSQRPPTQNATPPKWFCTSKG 256
Query: 286 LLGCGPSGIMAGDAIITDSGAMHVAGVPIVNPSTIVVWEVMPGPGNGFQVTPKTSINNGV 345
L+ CGPSGI+A DAIITDSG +HVAGV +P+T++VW V+PG GNG + +PKTSI
Sbjct: 257 LIECGPSGIIAADAIITDSGMLHVAGVLAFSPATVIVWVVLPGQGNGLEFSPKTSITTSA 316
Query: 346 PPLISPSWSGFAPLAAYLFSWQDYLLSEEKQGRNQTDQNLGDSIPLHCSPVSNFSAYVSP 405
P L P+W GFAPL A+LFSWQD SIPLHCS VSNFSAYVS
Sbjct: 317 P-LSPPNWIGFAPLPAFLFSWQD------------------QSIPLHCSTVSNFSAYVSS 357
Query: 406 EAAAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWE 465
EAA +T GV VAFDPTRGGSVIA V+VEG+YMSP+DPDE SITGWRVQRWE
Sbjct: 358 EAAP-----STQCCGVAGVAFDPTRGGSVIAAVVVEGKYMSPHDPDESLSITGWRVQRWE 412
Query: 466 SSLQHVVLHPIFGNPTSSMGGQPPMQTVWQSKVDLSIPPTNDFKNHQAPAVGMNADGQKV 525
SS Q VVL+PIFG SM G PPM+TVW+SKVD+SIP T+D
Sbjct: 413 SSFQPVVLNPIFG----SMDGNPPMRTVWESKVDISIPATDD------------------ 450
Query: 526 SMSCFDKSKGVNFDPFDLPSDVRTLARVVYSAHGGEIAIAFLRGGVHIFSGPNFAPVDNY 585
KSKG++F+PFDLP + TLARVV+SA GGEIA+AF +G V IFSG NF PV NY
Sbjct: 451 ------KSKGIHFNPFDLPKYLGTLARVVFSAQGGEIAVAFFQGRVRIFSGSNFEPVTNY 504
Query: 586 QINVGSAIXXXXXXXXXXXXXXVWHDTSKDQTILKIIRVLPPAVPTSQVKANSSTWERAI 645
+INVGS+I VWHDTSK + +LKIIRVLPP P Q KA SSTWE AI
Sbjct: 505 EINVGSSISVPAFSATSCCSASVWHDTSKGEAMLKIIRVLPPPFPIGQEKATSSTWEHAI 564
Query: 646 AERFWWSLLVGVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPTAEHRQQYCPCLD 705
+ERFW+SLLVGVDWWD VGCTQ AAE+GIVS+N VIAVLDADFHSLPTA+HRQQYC LD
Sbjct: 565 SERFWFSLLVGVDWWDVVGCTQRAAEEGIVSVNGVIAVLDADFHSLPTAQHRQQYCLGLD 624
Query: 706 RIKCRLLEGSNAQDVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQVSGETLSSI 765
IKCRLL GSNAQ+VRA VLDMQAR+LLDMLGKGIESALINPSAL+PDPWQ S E LS+
Sbjct: 625 MIKCRLLVGSNAQEVRATVLDMQARVLLDMLGKGIESALINPSALLPDPWQASEEILSNF 684
Query: 766 DPEEVAVEPALVPFIQAYVDSVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVA 825
D EE+AVEP L P IQAYVDSV+DLASH ITRLR YA RTLA+ AVT +GS V
Sbjct: 685 DMEEMAVEPELTPCIQAYVDSVIDLASHLITRLRHYAKIFRTLANQAVTVASGSTSGGVP 744
Query: 826 SPTQNSATSAXXXXXXXXXXXXXXXXXXXAWVHGAIAKISSTPDGVXXXXXXXXXXXXXX 885
+ T N + S
Sbjct: 745 NLTLNPSISG-----------------------------------------------PSS 757
Query: 886 FVPISINTGTFPGTPAVRLIGDXXXXXXXXXXXXXXXXXXXTQLPRYMSGSQRSADTNAQ 945
+ ISINTGTFPGTPAVRLIGD +QL RY SG +R+A+T+
Sbjct: 758 LMLISINTGTFPGTPAVRLIGDCHFLHRLCQLLFFCFFFKRSQLARYKSGLRRTAETSLV 817
Query: 946 KSQPNASVPGKVEENAKPLSNMDGQTGRVGQLVXXXXXXXXXXXXXXRIGTGNAGQGYTF 1005
+S DGQTGR Q+V R+G GNAGQGY+
Sbjct: 818 RSN-------------------DGQTGRDRQIVPGSKGGEEPSPGPVRLGNGNAGQGYSV 858
Query: 1006 EE 1007
EE
Sbjct: 859 EE 860
>Medtr2g013190.1 | mediator of RNA polymerase II transcription
subunit 16 | HC | chr2:3514276-3510400 | 20130731
Length = 360
Score = 489 bits (1259), Expect = e-138, Method: Compositional matrix adjust.
Identities = 253/397 (63%), Positives = 282/397 (71%), Gaps = 54/397 (13%)
Query: 50 DDPMEQDTATPATIFSIRLKQPRSNLIHKMSVPE-ICRNFSAVSWCGKLNAIACASETCA 108
+DPM ++ T+F IRLKQ S L+HKM++ E + RNFSAV+WC KLNAIACA+ETCA
Sbjct: 14 NDPMIEEVEA-GTVFHIRLKQSPSTLLHKMNLHESMRRNFSAVAWCAKLNAIACATETCA 72
Query: 109 RIPSSTANPPFWIPIHIVIPERPTECAVFNVIADSPRDSVQFIEWSPTCCPRALLIANFH 168
RIP S+ NPPFWIPIHIVIPERPTE AVFNV+ADSP DSVQFI+WSP CCPRALLIANFH
Sbjct: 73 RIPRSSVNPPFWIPIHIVIPERPTENAVFNVVADSPLDSVQFIQWSPVCCPRALLIANFH 132
Query: 169 GRVTVWTQPSQGPANVVLDTSCWLREHEWRQDIAVVTKWLSGVSLYRWHXXXXXXXXXXX 228
GRVT+WTQPS GPAN+V+DT+CWLREHEWRQD AVVTKWLSG YRW
Sbjct: 133 GRVTIWTQPSHGPANLVIDTNCWLREHEWRQDTAVVTKWLSG---YRWLSSKSSAPANLK 189
Query: 229 XMFEEKFLSQQSQTSARWPNFLCVCSVFSSGSVQLHWSQWPPSQNATPRKWFCTSKGLLG 288
+FEEKF+SQQSQTS P F CVCSV SGSVQLHWSQWPP+QNAT KWFCTSKGLL
Sbjct: 190 SIFEEKFISQQSQTSDG-PIF-CVCSVLQSGSVQLHWSQWPPTQNATLHKWFCTSKGLLA 247
Query: 289 CGPSGIMAGDAIITDSGAMHVAGVPIVNPSTIVVWEVMPGPGNGFQVTPKTSINNGVPPL 348
CGPSGI+ GDAIITD+G + VAGVP VNP+ I+VWEVMPG GN Q +PK SINNGVPPL
Sbjct: 248 CGPSGIITGDAIITDNGTLLVAGVPAVNPAAIIVWEVMPGRGNSLQFSPKKSINNGVPPL 307
Query: 349 ISPSWSGFAPLAAYLFSWQDYLLSEEKQGRNQTDQNLGDSIPLHCSPVSNFSAYVSPEAA 408
I S FSAYVSPE+A
Sbjct: 308 I-----------------------------------------------SKFSAYVSPESA 320
Query: 409 AQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYM 445
+S A TTW SGV AFDPTR GSVIA VIVEG +M
Sbjct: 321 VKSPAPTTWCSGVAGAAFDPTRDGSVIAAVIVEGMHM 357
>Medtr1g072070.1 | mediator of RNA polymerase II transcription
subunit 16 | LC | chr1:31951369-31952796 | 20130731
Length = 282
Score = 269 bits (687), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 171/368 (46%), Positives = 197/368 (53%), Gaps = 87/368 (23%)
Query: 272 QNATPRKWFCTSKGLLGCGPSGIMAGDAIITDSGAMHVAGVPIVNPSTIVVWEVMPGPGN 331
N T KWFC SKGLL CGPSGI+AGDAIITD+G +HVAGV NP+T++V E PG GN
Sbjct: 1 MNETQPKWFCISKGLLDCGPSGIIAGDAIITDNGTLHVAGVRAFNPATVIVCEASPGHGN 60
Query: 332 GFQVTPKTSINNGVPPLISPSWSGFAPLAAYLFSWQDYLLSEEKQGRNQTDQNLGDSIPL 391
G + +PKTSI APL
Sbjct: 61 GLEFSPKTSITTS------------APLT------------------------------- 77
Query: 392 HCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEG-QYMSPYDP 450
YVS E A TT GV VAFD GGSVI V +VE YMS ++P
Sbjct: 78 ----------YVSSEVAP-----TTQCCGVAGVAFDLMCGGSVIVVFVVEEFYYMSHHNP 122
Query: 451 DEGPSITGWRVQRWESSLQHVVLHPIFGNPTSSMGGQPPMQTVWQSKVDLSIPPTNDFKN 510
EGPS+T WRVQRWESS QHVV+HPIFG S G P +Q VW+SKVD+SIP TND
Sbjct: 123 YEGPSVTEWRVQRWESSSQHVVIHPIFG----SFHGNPDIQMVWESKVDISIPATND--- 175
Query: 511 HQAPAVGMNADGQKVSMSCFDKSKGVNFDPFDLPSDVRTLARVVYSAHGGEIAIAFLRGG 570
KSK ++F+ F+ D+ TLARVVYSA GGEI +AFL GG
Sbjct: 176 ---------------------KSKEIHFNRFNFLIDLGTLARVVYSAQGGEIVVAFLYGG 214
Query: 571 VHIFSGPNFAPVDNYQINVGSAIXXXXXXXXXXXXXXVWHDTSKDQTILKIIRVLPPAVP 630
+HIFSG F V NYQINVGS+I WHDT+K +LKII VLPP P
Sbjct: 215 IHIFSGLTFTHVANYQINVGSSIAILVFSATSYCSASAWHDTNKGDPMLKIIWVLPPTFP 274
Query: 631 TSQVKANS 638
Q KA S
Sbjct: 275 IGQEKATS 282
>Medtr1g072060.1 | mediator of RNA polymerase II transcription
subunit 16 | HC | chr1:31951275-31949767 | 20130731
Length = 267
Score = 200 bits (508), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 116/238 (48%), Positives = 133/238 (55%), Gaps = 58/238 (24%)
Query: 411 SAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSLQH 470
SAA TT GV VAFDPT G SVI V+VEG+YMSP+DP EGPSI GWR
Sbjct: 88 SAALTTKCCGVVGVAFDPTCGCSVIVFVVVEGKYMSPHDPYEGPSIIGWR---------- 137
Query: 471 VVLHPIFGNPTSSMGGQPPMQTVWQSKVDLSIPPTNDFKNHQAPAVGMNADGQKVSMSCF 530
+SKVD+SIP T+D
Sbjct: 138 ------------------------ESKVDISIPATHD----------------------- 150
Query: 531 DKSKGVNFDPFDLPSDVRTLARVVYSAHGGEIAIAFLRGGVHIFSGPNFAPVDNYQINVG 590
KSK ++F+ FDLP D+ TLARVVYSA GEI +AFL GG+HIFS F P+ NYQINVG
Sbjct: 151 -KSKRIHFNHFDLPIDLGTLARVVYSAQDGEIVVAFLHGGIHIFSCLTFTPLANYQINVG 209
Query: 591 SAIXXXXXXXXXXXXXXVWHDTSKDQTILKIIRVLPPAVPTSQVKANSSTWERAIAER 648
S+I VWH T+K + +LKIIRVLPPA P Q KANSSTWERAIAER
Sbjct: 210 SSIVVPTFSTTCCCSASVWHGTNKGEAMLKIIRVLPPAFPIGQEKANSSTWERAIAER 267
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 61/86 (70%), Gaps = 1/86 (1%)
Query: 269 PPSQNATPRKWFCTSKGLLGCGPSGIMAGDAIITDSGAMHVAGVPIVNPSTIVVWEVMPG 328
PPS+ AT KWFCTSKGLL CGPSGI++GDAIIT +G ++VA NP+T++VWEV G
Sbjct: 4 PPSKKATRPKWFCTSKGLLDCGPSGIISGDAIITHNGTLYVAAAQAFNPATVIVWEVSHG 63
Query: 329 PGNGFQVTPKTSINNGVPPLISPSWS 354
G G + PKTSI PL P+WS
Sbjct: 64 HGTGLEFAPKTSITTST-PLSPPNWS 88
>Medtr2g013180.1 | mediator of RNA polymerase II transcription subunit
16 | HC | chr2:3510265-3507471 | 20130731
Length = 439
Score = 180 bits (456), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 110/238 (46%), Positives = 125/238 (52%), Gaps = 19/238 (7%)
Query: 770 VAVEPALVPFIQAYVDSVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVASPTQ 829
+AVEPAL IQAYVDSVLDLA F TRLR YA FCRTLAS A TAG SN+NMVASP Q
Sbjct: 1 MAVEPALNSCIQAYVDSVLDLALSFFTRLRCYAKFCRTLASQAATAGNVSNQNMVASPAQ 60
Query: 830 NSATSAXXXXXXXXXXXXXXXXXXXAWVHGAIAKISSTPDGVXXXXXXXXXXXXXXFVPI 889
NS T AWV AIAKISST DGV +PI
Sbjct: 61 NSTTPETSQGGENGTTISGGSTQMNAWVQEAIAKISSTSDGVSNLTPTSPIGGPSSLMPI 120
Query: 890 SINTGTFPGTPAVRLIGDXXXXXXXXXXXXXXXXXXXTQLPRYMSGSQRSADTNAQKSQP 949
SINT TFPGTPAVRLIGD +QL YM+G +R+A+T+ +S
Sbjct: 121 SINTETFPGTPAVRLIGDCHFLQRLCQLLFFCFFFKRSQLVLYMNGLRRTAETSLVRSD- 179
Query: 950 NASVPGKVEENAKPLSNMDGQTGRVGQLVXXXXXXXXXXXXXXRIGTGNAGQGYTFEE 1007
DGQTGR GQ+V R+GTGN+GQGY+F+E
Sbjct: 180 ------------------DGQTGRAGQIVHGSKGGEEPSLGHIRLGTGNSGQGYSFKE 219
>Medtr4g010370.1 | mediator of RNA polymerase II transcription
subunit 16 | HC | chr4:2352171-2354538 | 20130731
Length = 153
Score = 143 bits (360), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/114 (63%), Positives = 81/114 (71%), Gaps = 14/114 (12%)
Query: 113 STANPPFWIPIHIVIPERPTECAVFNVIADSPRDSVQF----IEWSPTCCPRALLIANFH 168
S+ NP FWIPI IVIPERPTE A FNV+A + + I+WSP CCPRALLIANF
Sbjct: 12 SSVNPRFWIPIQIVIPERPTEIAAFNVVAGTLMSWLFHNYCSIQWSPVCCPRALLIANFQ 71
Query: 169 GRVTVWTQPSQ----------GPANVVLDTSCWLREHEWRQDIAVVTKWLSGVS 212
GRVT+WTQPSQ GP N+V+DT+CW EHEWRQD AVVTKWLSG S
Sbjct: 72 GRVTIWTQPSQCLYLPLFSIHGPTNIVIDTNCWQCEHEWRQDTAVVTKWLSGAS 125
>Medtr3g057920.1 | hypothetical protein | LC |
chr3:22926789-22925810 | 20130731
Length = 129
Score = 91.3 bits (225), Expect = 4e-18, Method: Composition-based stats.
Identities = 50/92 (54%), Positives = 60/92 (65%), Gaps = 14/92 (15%)
Query: 308 HVAGVPIVNPSTIVVWEVMPGPGNGFQVTPKTSINNGVPPLISPSWSGFAPLAAYLFSWQ 367
HV GVPI NPST+++WEVM NG Q+TPKTSINN VPP P+ Y +
Sbjct: 5 HVVGVPIDNPSTVILWEVMFRLVNGLQLTPKTSINNRVPP---PT--------TYNLGRR 53
Query: 368 DYLLSEEKQGRNQTDQNLGDSIPLHCSPVSNF 399
+Y +EKQ RN DQNLG+SI LHCSPVS +
Sbjct: 54 EY---KEKQWRNLEDQNLGESISLHCSPVSMY 82
>Medtr3g057930.1 | transmembrane protein, putative | LC |
chr3:22926926-22927348 | 20130731
Length = 114
Score = 83.6 bits (205), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 58/138 (42%), Positives = 72/138 (52%), Gaps = 29/138 (21%)
Query: 309 VAGVPIVNPSTIVVWEVMPGPGNGFQVTPKTSINNGVPPLISPSWSGFAPLAAYLFSWQD 368
V GV I NPST+VV +VM GF+ LAAYL
Sbjct: 2 VGGVQIDNPSTVVVRKVM--------------------------HRGFSFLAAYLLVVLI 35
Query: 369 Y-LLSEEKQGRNQTDQNLGDSIPLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFD 427
LS+ +NQTDQN+ +SIP H SP+S S YV A QS TTT S +T VAFD
Sbjct: 36 ISYLSKRNGKKNQTDQNIVESIPHHNSPISISSTYV--IATVQSPLTTTSCSRITKVAFD 93
Query: 428 PTRGGSVIAVVIVEGQYM 445
P GS++AVVIV+G ++
Sbjct: 94 PIHCGSMLAVVIVDGMHL 111