Miyakogusa Predicted Gene
- Lj6g3v2043290.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v2043290.1 Non Characterized Hit- tr|I3T7G4|I3T7G4_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.42,0,RRM_1,RNA
recognition motif domain; RRM_6,NULL; RRM_5,NULL; RNA-binding domain,
RBD,NULL; no descrip,CUFF.60643.1
(517 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr2g013130.1 | U2 snRNP auxilliary factor, large subunit, spl... 688 0.0
Medtr2g013130.2 | U2 snRNP auxilliary factor, large subunit, spl... 652 0.0
Medtr2g013130.3 | U2 snRNP auxilliary factor, large subunit, spl... 634 0.0
Medtr2g013130.4 | U2 snRNP auxilliary factor, large subunit, spl... 587 e-167
Medtr3g005670.2 | U2 snRNP auxilliary factor, large subunit, spl... 500 e-141
Medtr3g005670.1 | U2 snRNP auxilliary factor, large subunit, spl... 498 e-141
Medtr4g031680.1 | U2 snRNP auxilliary factor, large subunit, spl... 485 e-137
Medtr3g005670.4 | U2 snRNP auxilliary factor, large subunit, spl... 453 e-127
Medtr3g005670.6 | U2 snRNP auxilliary factor, large subunit, spl... 452 e-127
Medtr3g005670.5 | U2 snRNP auxilliary factor, large subunit, spl... 451 e-127
Medtr3g005670.7 | U2 snRNP auxilliary factor, large subunit, spl... 450 e-126
Medtr3g005670.3 | U2 snRNP auxilliary factor, large subunit, spl... 418 e-117
Medtr1g041735.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 104 2e-22
Medtr1g041735.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 104 2e-22
Medtr1g041735.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 104 2e-22
Medtr1g041735.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 91 2e-18
Medtr1g097280.1 | cleavage stimulating factor, putative | HC | c... 69 1e-11
Medtr5g070100.1 | RNA recognition motif (RRM) containing protein... 62 2e-09
Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 3e-08
Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 3e-08
Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 3e-08
Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C, p... 57 6e-08
Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C, p... 57 6e-08
Medtr5g064120.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 2e-07
Medtr4g036415.1 | splicing factor-like protein | HC | chr4:13104... 55 2e-07
Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 2e-07
Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 2e-07
Medtr7g102730.1 | polyadenylate-binding protein | HC | chr7:4165... 54 3e-07
Medtr3g116130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 6e-07
Medtr3g116130.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 1e-06
Medtr3g092490.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 2e-06
Medtr3g092490.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 2e-06
Medtr8g024520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 2e-06
Medtr8g024520.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 2e-06
Medtr3g092490.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 2e-06
Medtr3g092490.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 2e-06
Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 3e-06
Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 3e-06
Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 51 3e-06
Medtr1g061870.1 | polyadenylate-binding plant protein, putative ... 51 3e-06
Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 3e-06
Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 4e-06
Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 4e-06
Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 9e-06
Medtr1g097440.2 | polyadenylate-binding protein | HC | chr1:4396... 49 9e-06
Medtr1g097440.1 | polyadenylate-binding protein | HC | chr1:4396... 49 9e-06
>Medtr2g013130.1 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3475903-3485643 | 20130731
Length = 522
Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/521 (67%), Positives = 395/521 (75%), Gaps = 13/521 (2%)
Query: 1 MSDVENHTFHRXXXXXXXXXXXXXXXXRESTRMRKQDGEXXX--XXXXXXXXYKDGGFNG 58
MSD++NH +H +STRMR++DG+ K GF G
Sbjct: 1 MSDIDNHAYH---GASSPDKPSSRGSGHDSTRMRRRDGDRKSFHDHRDRHRDDKYEGFKG 57
Query: 59 RDRYNSYNRHRSRDYDRHNDRVKDGERRHKYEAHXXXXXXXXXXXXXXXXXXXX--XXXX 116
R +Y+SYNR R RDYDRHND +D + R++Y AH
Sbjct: 58 RGKYDSYNRQRGRDYDRHNDYDRDRDTRNRYGAHSKRSRRESRSRSRSRSPSQSEGKRTS 117
Query: 117 XFDMAPPSADGTSAVSGQTLGINHLNQGTAQNFSLFGISQPQIGALSLMQVQPMTQQATR 176
FDMAPP+ T VSGQ GI H+ QG QNFS +GISQ IGALSLMQVQPMTQQATR
Sbjct: 118 GFDMAPPATGVTPTVSGQMPGIAHMIQGATQNFSPYGISQ--IGALSLMQVQPMTQQATR 175
Query: 177 HARRVYIGGLPPLTNEQSIATFFSHVMTAIGGNSAGAGDSVVNVYINHEKKFAFLEMRTV 236
HARRVY+GGLPP NEQSIA+FFS VM AIGGNSAG+GDSVVNVYINHEKKFAF+EMRTV
Sbjct: 176 HARRVYVGGLPPFANEQSIASFFSQVMIAIGGNSAGSGDSVVNVYINHEKKFAFVEMRTV 235
Query: 237 EEASNAMSLDGIVFEGVSVRVRRPTDYNPTLAAALGPCQPSPYLNLSAVXXXXXXXXXXX 296
EEASNAM+LDGIVFEGV+VRVRRPTDYNP+LAA LGPCQPS LNLSAV
Sbjct: 236 EEASNAMALDGIVFEGVAVRVRRPTDYNPSLAAVLGPCQPSANLNLSAVGLSAGTIGGAE 295
Query: 297 XXXRIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMA 356
RIFVGGLPYYF E Q+RELLQAFGPLRSFD+VRDKETGNSKGYGFCIYQDPAVTD+A
Sbjct: 296 GLDRIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIA 355
Query: 357 CASLNGLKMGDKTLTVRRATVSGHSKTEQEHIFAQAQQNITMQKVALEVVGLNIPGVERV 416
CA+LNGLKMGDKTLTVRRATVS HSK E+++IFA+AQQ+I MQK+ALEVVGLNIPG V
Sbjct: 356 CAALNGLKMGDKTLTVRRATVSAHSKPEEDNIFARAQQHIAMQKIALEVVGLNIPG---V 412
Query: 417 PTTIDESATKVLCLTEAITTDELMDNEEYEEIVEDMRDECGKFGTLMNVVIPRPNPSGEQ 476
PT DES TKVLCLTEA+TT++L DN EYEEI+EDMRDEC KFGTL+NVVIPRPNP+GE
Sbjct: 413 PTN-DESPTKVLCLTEAVTTEQLTDNGEYEEILEDMRDECRKFGTLVNVVIPRPNPNGEL 471
Query: 477 TPGIGKVFLEYSDTAASFAAKSALNGRKFGGNMVTAYYYPE 517
+ GIGKVFLEYSD A AAK+ALNGRKFGG++VTA+YYPE
Sbjct: 472 STGIGKVFLEYSDCTACLAAKNALNGRKFGGSIVTAFYYPE 512
>Medtr2g013130.2 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3475909-3485643 | 20130731
Length = 507
Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/521 (64%), Positives = 380/521 (72%), Gaps = 28/521 (5%)
Query: 1 MSDVENHTFHRXXXXXXXXXXXXXXXXRESTRMRKQDGEXXX--XXXXXXXXYKDGGFNG 58
MSD++NH +H +STRMR++DG+ K GF G
Sbjct: 1 MSDIDNHAYH---GASSPDKPSSRGSGHDSTRMRRRDGDRKSFHDHRDRHRDDKYEGFKG 57
Query: 59 RDRYNSYNRHRSRDYDRHNDRVKDGERRHKYEAHXXXXXXXXXXXXXXXXXXXX--XXXX 116
R +Y+SYNR R RDYDRHND +D + R++Y AH
Sbjct: 58 RGKYDSYNRQRGRDYDRHNDYDRDRDTRNRYGAHSKRSRRESRSRSRSRSPSQSEGKRTS 117
Query: 117 XFDMAPPSADGTSAVSGQTLGINHLNQGTAQNFSLFGISQPQIGALSLMQVQPMTQQATR 176
FDMAPP+ T VSGQ GI H+ QG QNFS +GISQ ATR
Sbjct: 118 GFDMAPPATGVTPTVSGQMPGIAHMIQGATQNFSPYGISQ-----------------ATR 160
Query: 177 HARRVYIGGLPPLTNEQSIATFFSHVMTAIGGNSAGAGDSVVNVYINHEKKFAFLEMRTV 236
HARRVY+GGLPP NEQSIA+FFS VM AIGGNSAG+GDSVVNVYINHEKKFAF+EMRTV
Sbjct: 161 HARRVYVGGLPPFANEQSIASFFSQVMIAIGGNSAGSGDSVVNVYINHEKKFAFVEMRTV 220
Query: 237 EEASNAMSLDGIVFEGVSVRVRRPTDYNPTLAAALGPCQPSPYLNLSAVXXXXXXXXXXX 296
EEASNAM+LDGIVFEGV+VRVRRPTDYNP+LAA LGPCQPS LNLSAV
Sbjct: 221 EEASNAMALDGIVFEGVAVRVRRPTDYNPSLAAVLGPCQPSANLNLSAVGLSAGTIGGAE 280
Query: 297 XXXRIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMA 356
RIFVGGLPYYF E Q+RELLQAFGPLRSFD+VRDKETGNSKGYGFCIYQDPAVTD+A
Sbjct: 281 GLDRIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIA 340
Query: 357 CASLNGLKMGDKTLTVRRATVSGHSKTEQEHIFAQAQQNITMQKVALEVVGLNIPGVERV 416
CA+LNGLKMGDKTLTVRRATVS HSK E+++IFA+AQQ+I MQK+ALEVVGLNIPG V
Sbjct: 341 CAALNGLKMGDKTLTVRRATVSAHSKPEEDNIFARAQQHIAMQKIALEVVGLNIPG---V 397
Query: 417 PTTIDESATKVLCLTEAITTDELMDNEEYEEIVEDMRDECGKFGTLMNVVIPRPNPSGEQ 476
PT DES TKVLCLTEA+TT++L DN EYEEI+EDMRDEC KFGTL+NVVIPRPNP+GE
Sbjct: 398 PTN-DESPTKVLCLTEAVTTEQLTDNGEYEEILEDMRDECRKFGTLVNVVIPRPNPNGEL 456
Query: 477 TPGIGKVFLEYSDTAASFAAKSALNGRKFGGNMVTAYYYPE 517
+ GIGKVFLEYSD A AAK+ALNGRKFGG++VTA+YYPE
Sbjct: 457 STGIGKVFLEYSDCTACLAAKNALNGRKFGGSIVTAFYYPE 497
>Medtr2g013130.3 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3477024-3485643 | 20130731
Length = 402
Score = 634 bits (1635), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/398 (78%), Positives = 343/398 (86%), Gaps = 6/398 (1%)
Query: 120 MAPPSADGTSAVSGQTLGINHLNQGTAQNFSLFGISQPQIGALSLMQVQPMTQQATRHAR 179
MAPP+ T VSGQ GI H+ QG QNFS +GISQ IGALSLMQVQPMTQQATRHAR
Sbjct: 1 MAPPATGVTPTVSGQMPGIAHMIQGATQNFSPYGISQ--IGALSLMQVQPMTQQATRHAR 58
Query: 180 RVYIGGLPPLTNEQSIATFFSHVMTAIGGNSAGAGDSVVNVYINHEKKFAFLEMRTVEEA 239
RVY+GGLPP NEQSIA+FFS VM AIGGNSAG+GDSVVNVYINHEKKFAF+EMRTVEEA
Sbjct: 59 RVYVGGLPPFANEQSIASFFSQVMIAIGGNSAGSGDSVVNVYINHEKKFAFVEMRTVEEA 118
Query: 240 SNAMSLDGIVFEGVSVRVRRPTDYNPTLAAALGPCQPSPYLNLSAVXXXXXXXXXXXXXX 299
SNAM+LDGIVFEGV+VRVRRPTDYNP+LAA LGPCQPS LNLSAV
Sbjct: 119 SNAMALDGIVFEGVAVRVRRPTDYNPSLAAVLGPCQPSANLNLSAVGLSAGTIGGAEGLD 178
Query: 300 RIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMACAS 359
RIFVGGLPYYF E Q+RELLQAFGPLRSFD+VRDKETGNSKGYGFCIYQDPAVTD+ACA+
Sbjct: 179 RIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIACAA 238
Query: 360 LNGLKMGDKTLTVRRATVSGHSKTEQEHIFAQAQQNITMQKVALEVVGLNIPGVERVPTT 419
LNGLKMGDKTLTVRRATVS HSK E+++IFA+AQQ+I MQK+ALEVVGLNIPG VPT
Sbjct: 239 LNGLKMGDKTLTVRRATVSAHSKPEEDNIFARAQQHIAMQKIALEVVGLNIPG---VPTN 295
Query: 420 IDESATKVLCLTEAITTDELMDNEEYEEIVEDMRDECGKFGTLMNVVIPRPNPSGEQTPG 479
DES TKVLCLTEA+TT++L DN EYEEI+EDMRDEC KFGTL+NVVIPRPNP+GE + G
Sbjct: 296 -DESPTKVLCLTEAVTTEQLTDNGEYEEILEDMRDECRKFGTLVNVVIPRPNPNGELSTG 354
Query: 480 IGKVFLEYSDTAASFAAKSALNGRKFGGNMVTAYYYPE 517
IGKVFLEYSD A AAK+ALNGRKFGG++VTA+YYPE
Sbjct: 355 IGKVFLEYSDCTACLAAKNALNGRKFGGSIVTAFYYPE 392
>Medtr2g013130.4 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3477024-3485643 | 20130731
Length = 359
Score = 587 bits (1512), Expect = e-167, Method: Compositional matrix adjust.
Identities = 284/353 (80%), Positives = 312/353 (88%), Gaps = 4/353 (1%)
Query: 165 MQVQPMTQQATRHARRVYIGGLPPLTNEQSIATFFSHVMTAIGGNSAGAGDSVVNVYINH 224
MQVQPMTQQATRHARRVY+GGLPP NEQSIA+FFS VM AIGGNSAG+GDSVVNVYINH
Sbjct: 1 MQVQPMTQQATRHARRVYVGGLPPFANEQSIASFFSQVMIAIGGNSAGSGDSVVNVYINH 60
Query: 225 EKKFAFLEMRTVEEASNAMSLDGIVFEGVSVRVRRPTDYNPTLAAALGPCQPSPYLNLSA 284
EKKFAF+EMRTVEEASNAM+LDGIVFEGV+VRVRRPTDYNP+LAA LGPCQPS LNLSA
Sbjct: 61 EKKFAFVEMRTVEEASNAMALDGIVFEGVAVRVRRPTDYNPSLAAVLGPCQPSANLNLSA 120
Query: 285 VXXXXXXXXXXXXXXRIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGF 344
V RIFVGGLPYYF E Q+RELLQAFGPLRSFD+VRDKETGNSKGYGF
Sbjct: 121 VGLSAGTIGGAEGLDRIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGF 180
Query: 345 CIYQDPAVTDMACASLNGLKMGDKTLTVRRATVSGHSKTEQEHIFAQAQQNITMQKVALE 404
CIYQDPAVTD+ACA+LNGLKMGDKTLTVRRATVS HSK E+++IFA+AQQ+I MQK+ALE
Sbjct: 181 CIYQDPAVTDIACAALNGLKMGDKTLTVRRATVSAHSKPEEDNIFARAQQHIAMQKIALE 240
Query: 405 VVGLNIPGVERVPTTIDESATKVLCLTEAITTDELMDNEEYEEIVEDMRDECGKFGTLMN 464
VVGLNIPG VPT DES TKVLCLTEA+TT++L DN EYEEI+EDMRDEC KFGTL+N
Sbjct: 241 VVGLNIPG---VPTN-DESPTKVLCLTEAVTTEQLTDNGEYEEILEDMRDECRKFGTLVN 296
Query: 465 VVIPRPNPSGEQTPGIGKVFLEYSDTAASFAAKSALNGRKFGGNMVTAYYYPE 517
VVIPRPNP+GE + GIGKVFLEYSD A AAK+ALNGRKFGG++VTA+YYPE
Sbjct: 297 VVIPRPNPNGELSTGIGKVFLEYSDCTACLAAKNALNGRKFGGSIVTAFYYPE 349
>Medtr3g005670.2 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 624
Score = 500 bits (1287), Expect = e-141, Method: Compositional matrix adjust.
Identities = 250/405 (61%), Positives = 293/405 (72%), Gaps = 21/405 (5%)
Query: 118 FDMAPPSAD--GTSAVSGQTLGINHLNQGTAQNFSLFGISQPQIGALSLMQVQPMTQQAT 175
FDMAPP++ G + V+GQ G + G N +QP AL ++ VQ MTQQAT
Sbjct: 226 FDMAPPTSAILGATGVAGQITGASPAIPGMFPNMFPLPTNQP-FSALPVLPVQAMTQQAT 284
Query: 176 RHARRVYIGGLPPLTNEQSIATFFSHVMTAIGGNSAGAGDSVVNVYINHEKKFAFLEMRT 235
RHARRVY+GGL P NEQS+ATFFS VM IGGN+AG GD+VVNVYINH+KKFAF+EMR+
Sbjct: 285 RHARRVYVGGLSPTANEQSVATFFSQVMATIGGNTAGPGDAVVNVYINHDKKFAFVEMRS 344
Query: 236 VEEASNAMSLDGIVFEGVSVRVRRPTDYNPTLAAALGPCQPSPYLNLSAVXXXXXXXXXX 295
VEEASNAM+LDGI+FEG V+VRRPTDYNP+LAAALGP QP+P LNL V
Sbjct: 345 VEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLGLVGLSPGSAGGL 404
Query: 296 XXXXRIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDM 355
RIFVGG+PYYF E QIRELL+ FGPLR FDLV+D+ETGNSKGY FC+YQD AVTD+
Sbjct: 405 DGPDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDI 464
Query: 356 ACASLNGLKMGDKTLTVRRA---TVSGHSKTEQEHIFAQAQQNITMQKVALEVVGLNIPG 412
ACA+LNG+KMGDKTLTVRRA T K EQE I AQQ I +QK+ L+
Sbjct: 465 ACAALNGIKMGDKTLTVRRANQNTNPMQPKPEQESILMHAQQQIALQKLMLQ-------- 516
Query: 413 VERVPTTIDESATKVLCLTEAITTDELMDNEEYEEIVEDMRDECGKFGTLMNVVIPRPNP 472
P + ATKVLCLT A++ DEL D+E+YEEI++DMR EC KFG L+NVVIPRP P
Sbjct: 517 ----PALV---ATKVLCLTHAVSPDELKDDEDYEEILDDMRQECSKFGNLVNVVIPRPRP 569
Query: 473 SGEQTPGIGKVFLEYSDTAASFAAKSALNGRKFGGNMVTAYYYPE 517
GE PG+GKVFLEY+D S A+S LNGRKFGGN V A +YPE
Sbjct: 570 DGELCPGVGKVFLEYADVDGSTKARSGLNGRKFGGNQVIAVFYPE 614
>Medtr3g005670.1 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 626
Score = 498 bits (1282), Expect = e-141, Method: Compositional matrix adjust.
Identities = 250/406 (61%), Positives = 293/406 (72%), Gaps = 21/406 (5%)
Query: 118 FDMAPPSAD--GTSAVSGQTLGINHLNQGTAQNFSLFGISQPQ-IGALSLMQVQPMTQQA 174
FDMAPP++ G + V+GQ G + G N +Q Q AL ++ VQ MTQQA
Sbjct: 226 FDMAPPTSAILGATGVAGQITGASPAIPGMFPNMFPLPTNQVQPFSALPVLPVQAMTQQA 285
Query: 175 TRHARRVYIGGLPPLTNEQSIATFFSHVMTAIGGNSAGAGDSVVNVYINHEKKFAFLEMR 234
TRHARRVY+GGL P NEQS+ATFFS VM IGGN+AG GD+VVNVYINH+KKFAF+EMR
Sbjct: 286 TRHARRVYVGGLSPTANEQSVATFFSQVMATIGGNTAGPGDAVVNVYINHDKKFAFVEMR 345
Query: 235 TVEEASNAMSLDGIVFEGVSVRVRRPTDYNPTLAAALGPCQPSPYLNLSAVXXXXXXXXX 294
+VEEASNAM+LDGI+FEG V+VRRPTDYNP+LAAALGP QP+P LNL V
Sbjct: 346 SVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLGLVGLSPGSAGG 405
Query: 295 XXXXXRIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTD 354
RIFVGG+PYYF E QIRELL+ FGPLR FDLV+D+ETGNSKGY FC+YQD AVTD
Sbjct: 406 LDGPDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTD 465
Query: 355 MACASLNGLKMGDKTLTVRRA---TVSGHSKTEQEHIFAQAQQNITMQKVALEVVGLNIP 411
+ACA+LNG+KMGDKTLTVRRA T K EQE I AQQ I +QK+ L+
Sbjct: 466 IACAALNGIKMGDKTLTVRRANQNTNPMQPKPEQESILMHAQQQIALQKLMLQ------- 518
Query: 412 GVERVPTTIDESATKVLCLTEAITTDELMDNEEYEEIVEDMRDECGKFGTLMNVVIPRPN 471
P + ATKVLCLT A++ DEL D+E+YEEI++DMR EC KFG L+NVVIPRP
Sbjct: 519 -----PALV---ATKVLCLTHAVSPDELKDDEDYEEILDDMRQECSKFGNLVNVVIPRPR 570
Query: 472 PSGEQTPGIGKVFLEYSDTAASFAAKSALNGRKFGGNMVTAYYYPE 517
P GE PG+GKVFLEY+D S A+S LNGRKFGGN V A +YPE
Sbjct: 571 PDGELCPGVGKVFLEYADVDGSTKARSGLNGRKFGGNQVIAVFYPE 616
>Medtr4g031680.1 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr4:10777189-10770195 | 20130731
Length = 574
Score = 485 bits (1249), Expect = e-137, Method: Compositional matrix adjust.
Identities = 241/404 (59%), Positives = 291/404 (72%), Gaps = 19/404 (4%)
Query: 118 FDMAPPSA--DGTSAVSGQTLGINHLNQGTAQNFSLFGISQ-PQIGALSLMQVQPMTQQA 174
FD+APP++ G +AV+GQ N G N G +Q PQ AL +M +Q MTQQA
Sbjct: 176 FDLAPPASMLAGPAAVTGQITVPNPAISGVLPNMFPMGANQMPQFSALPMMPIQAMTQQA 235
Query: 175 TRHARRVYIGGLPPLTNEQSIATFFSHVMTAIGGNSAGAGDSVVNVYINHEKKFAFLEMR 234
TRHARRVY+GGLPP NEQS+A FFS VM IGGN+AG GD+VVNVYINH+KKFAF+EMR
Sbjct: 236 TRHARRVYVGGLPPTANEQSVAIFFSQVMANIGGNTAGPGDAVVNVYINHDKKFAFVEMR 295
Query: 235 TVEEASNAMSLDGIVFEGVSVRVRRPTDYNPTLAAALGPCQPSPYLNLSAVXXXXXXXXX 294
+VEEASNAM+LDGI+FEG V+VRRPTDYNP+LAA LGP QP+P LNL AV
Sbjct: 296 SVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAGG 355
Query: 295 XXXXXRIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTD 354
RIFVGGLPYYF E QIRELL+ FGPLR FDLV+D+ETGNSKGY FC+Y D AVTD
Sbjct: 356 LEGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYADLAVTD 415
Query: 355 MACASLNGLKMGDKTLTVRRATV-SGHSKTEQEHIFAQAQQNITMQKVALEVVGLNIPGV 413
+ACA+LNG+KMGDKTLTVRRA + K EQE I AQQ I +QK+ +
Sbjct: 416 IACAALNGIKMGDKTLTVRRANQGTTQPKPEQESILMHAQQQIALQKLIFQ--------- 466
Query: 414 ERVPTTIDESATKVLCLTEAITTDELMDNEEYEEIVEDMRDECGKFGTLMNVVIPRPNPS 473
P + ATKV+CLT A+ +EL ++E++EEI++DMR EC KFG+L+NVVIPRP P
Sbjct: 467 ---PALV---ATKVVCLTNAVAPEELKEDEDFEEIIDDMRQECSKFGSLVNVVIPRPQPD 520
Query: 474 GEQTPGIGKVFLEYSDTAASFAAKSALNGRKFGGNMVTAYYYPE 517
G+ + G+GKVFLEY D + A++ LNGRKFGGN V A +Y E
Sbjct: 521 GDLSGGVGKVFLEYVDIEGATKARTGLNGRKFGGNEVIAVFYSE 564
>Medtr3g005670.4 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 583
Score = 453 bits (1165), Expect = e-127, Method: Compositional matrix adjust.
Identities = 227/373 (60%), Positives = 268/373 (71%), Gaps = 21/373 (5%)
Query: 118 FDMAPPSAD--GTSAVSGQTLGINHLNQGTAQNFSLFGISQPQIGALSLMQVQPMTQQAT 175
FDMAPP++ G + V+GQ G + G N +QP AL ++ VQ MTQQAT
Sbjct: 226 FDMAPPTSAILGATGVAGQITGASPAIPGMFPNMFPLPTNQP-FSALPVLPVQAMTQQAT 284
Query: 176 RHARRVYIGGLPPLTNEQSIATFFSHVMTAIGGNSAGAGDSVVNVYINHEKKFAFLEMRT 235
RHARRVY+GGL P NEQS+ATFFS VM IGGN+AG GD+VVNVYINH+KKFAF+EMR+
Sbjct: 285 RHARRVYVGGLSPTANEQSVATFFSQVMATIGGNTAGPGDAVVNVYINHDKKFAFVEMRS 344
Query: 236 VEEASNAMSLDGIVFEGVSVRVRRPTDYNPTLAAALGPCQPSPYLNLSAVXXXXXXXXXX 295
VEEASNAM+LDGI+FEG V+VRRPTDYNP+LAAALGP QP+P LNL V
Sbjct: 345 VEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLGLVGLSPGSAGGL 404
Query: 296 XXXXRIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDM 355
RIFVGG+PYYF E QIRELL+ FGPLR FDLV+D+ETGNSKGY FC+YQD AVTD+
Sbjct: 405 DGPDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDI 464
Query: 356 ACASLNGLKMGDKTLTVRRA---TVSGHSKTEQEHIFAQAQQNITMQKVALEVVGLNIPG 412
ACA+LNG+KMGDKTLTVRRA T K EQE I AQQ I +QK+ L+
Sbjct: 465 ACAALNGIKMGDKTLTVRRANQNTNPMQPKPEQESILMHAQQQIALQKLMLQ-------- 516
Query: 413 VERVPTTIDESATKVLCLTEAITTDELMDNEEYEEIVEDMRDECGKFGTLMNVVIPRPNP 472
P + ATKVLCLT A++ DEL D+E+YEEI++DMR EC KFG L+NVVIPRP P
Sbjct: 517 ----PALV---ATKVLCLTHAVSPDELKDDEDYEEILDDMRQECSKFGNLVNVVIPRPRP 569
Query: 473 SGEQTPGIGKVFL 485
GE PG+GK +
Sbjct: 570 DGELCPGVGKEIM 582
>Medtr3g005670.6 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 624
Score = 452 bits (1163), Expect = e-127, Method: Compositional matrix adjust.
Identities = 228/371 (61%), Positives = 268/371 (72%), Gaps = 21/371 (5%)
Query: 118 FDMAPPSAD--GTSAVSGQTLGINHLNQGTAQNFSLFGISQPQIGALSLMQVQPMTQQAT 175
FDMAPP++ G + V+GQ G + G N +QP AL ++ VQ MTQQAT
Sbjct: 226 FDMAPPTSAILGATGVAGQITGASPAIPGMFPNMFPLPTNQP-FSALPVLPVQAMTQQAT 284
Query: 176 RHARRVYIGGLPPLTNEQSIATFFSHVMTAIGGNSAGAGDSVVNVYINHEKKFAFLEMRT 235
RHARRVY+GGL P NEQS+ATFFS VM IGGN+AG GD+VVNVYINH+KKFAF+EMR+
Sbjct: 285 RHARRVYVGGLSPTANEQSVATFFSQVMATIGGNTAGPGDAVVNVYINHDKKFAFVEMRS 344
Query: 236 VEEASNAMSLDGIVFEGVSVRVRRPTDYNPTLAAALGPCQPSPYLNLSAVXXXXXXXXXX 295
VEEASNAM+LDGI+FEG V+VRRPTDYNP+LAAALGP QP+P LNL V
Sbjct: 345 VEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLGLVGLSPGSAGGL 404
Query: 296 XXXXRIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDM 355
RIFVGG+PYYF E QIRELL+ FGPLR FDLV+D+ETGNSKGY FC+YQD AVTD+
Sbjct: 405 DGPDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDI 464
Query: 356 ACASLNGLKMGDKTLTVRRA---TVSGHSKTEQEHIFAQAQQNITMQKVALEVVGLNIPG 412
ACA+LNG+KMGDKTLTVRRA T K EQE I AQQ I +QK+ L+
Sbjct: 465 ACAALNGIKMGDKTLTVRRANQNTNPMQPKPEQESILMHAQQQIALQKLMLQ-------- 516
Query: 413 VERVPTTIDESATKVLCLTEAITTDELMDNEEYEEIVEDMRDECGKFGTLMNVVIPRPNP 472
P + ATKVLCLT A++ DEL D+E+YEEI++DMR EC KFG L+NVVIPRP P
Sbjct: 517 ----PALV---ATKVLCLTHAVSPDELKDDEDYEEILDDMRQECSKFGNLVNVVIPRPRP 569
Query: 473 SGEQTPGIGKV 483
GE PG+GKV
Sbjct: 570 DGELCPGVGKV 580
>Medtr3g005670.5 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 585
Score = 451 bits (1160), Expect = e-127, Method: Compositional matrix adjust.
Identities = 227/374 (60%), Positives = 268/374 (71%), Gaps = 21/374 (5%)
Query: 118 FDMAPPSAD--GTSAVSGQTLGINHLNQGTAQNFSLFGISQPQ-IGALSLMQVQPMTQQA 174
FDMAPP++ G + V+GQ G + G N +Q Q AL ++ VQ MTQQA
Sbjct: 226 FDMAPPTSAILGATGVAGQITGASPAIPGMFPNMFPLPTNQVQPFSALPVLPVQAMTQQA 285
Query: 175 TRHARRVYIGGLPPLTNEQSIATFFSHVMTAIGGNSAGAGDSVVNVYINHEKKFAFLEMR 234
TRHARRVY+GGL P NEQS+ATFFS VM IGGN+AG GD+VVNVYINH+KKFAF+EMR
Sbjct: 286 TRHARRVYVGGLSPTANEQSVATFFSQVMATIGGNTAGPGDAVVNVYINHDKKFAFVEMR 345
Query: 235 TVEEASNAMSLDGIVFEGVSVRVRRPTDYNPTLAAALGPCQPSPYLNLSAVXXXXXXXXX 294
+VEEASNAM+LDGI+FEG V+VRRPTDYNP+LAAALGP QP+P LNL V
Sbjct: 346 SVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLGLVGLSPGSAGG 405
Query: 295 XXXXXRIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTD 354
RIFVGG+PYYF E QIRELL+ FGPLR FDLV+D+ETGNSKGY FC+YQD AVTD
Sbjct: 406 LDGPDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTD 465
Query: 355 MACASLNGLKMGDKTLTVRRA---TVSGHSKTEQEHIFAQAQQNITMQKVALEVVGLNIP 411
+ACA+LNG+KMGDKTLTVRRA T K EQE I AQQ I +QK+ L+
Sbjct: 466 IACAALNGIKMGDKTLTVRRANQNTNPMQPKPEQESILMHAQQQIALQKLMLQ------- 518
Query: 412 GVERVPTTIDESATKVLCLTEAITTDELMDNEEYEEIVEDMRDECGKFGTLMNVVIPRPN 471
P + ATKVLCLT A++ DEL D+E+YEEI++DMR EC KFG L+NVVIPRP
Sbjct: 519 -----PALV---ATKVLCLTHAVSPDELKDDEDYEEILDDMRQECSKFGNLVNVVIPRPR 570
Query: 472 PSGEQTPGIGKVFL 485
P GE PG+GK +
Sbjct: 571 PDGELCPGVGKEIM 584
>Medtr3g005670.7 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 626
Score = 450 bits (1157), Expect = e-126, Method: Compositional matrix adjust.
Identities = 228/372 (61%), Positives = 268/372 (72%), Gaps = 21/372 (5%)
Query: 118 FDMAPPSAD--GTSAVSGQTLGINHLNQGTAQNFSLFGISQPQ-IGALSLMQVQPMTQQA 174
FDMAPP++ G + V+GQ G + G N +Q Q AL ++ VQ MTQQA
Sbjct: 226 FDMAPPTSAILGATGVAGQITGASPAIPGMFPNMFPLPTNQVQPFSALPVLPVQAMTQQA 285
Query: 175 TRHARRVYIGGLPPLTNEQSIATFFSHVMTAIGGNSAGAGDSVVNVYINHEKKFAFLEMR 234
TRHARRVY+GGL P NEQS+ATFFS VM IGGN+AG GD+VVNVYINH+KKFAF+EMR
Sbjct: 286 TRHARRVYVGGLSPTANEQSVATFFSQVMATIGGNTAGPGDAVVNVYINHDKKFAFVEMR 345
Query: 235 TVEEASNAMSLDGIVFEGVSVRVRRPTDYNPTLAAALGPCQPSPYLNLSAVXXXXXXXXX 294
+VEEASNAM+LDGI+FEG V+VRRPTDYNP+LAAALGP QP+P LNL V
Sbjct: 346 SVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLGLVGLSPGSAGG 405
Query: 295 XXXXXRIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTD 354
RIFVGG+PYYF E QIRELL+ FGPLR FDLV+D+ETGNSKGY FC+YQD AVTD
Sbjct: 406 LDGPDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTD 465
Query: 355 MACASLNGLKMGDKTLTVRRA---TVSGHSKTEQEHIFAQAQQNITMQKVALEVVGLNIP 411
+ACA+LNG+KMGDKTLTVRRA T K EQE I AQQ I +QK+ L+
Sbjct: 466 IACAALNGIKMGDKTLTVRRANQNTNPMQPKPEQESILMHAQQQIALQKLMLQ------- 518
Query: 412 GVERVPTTIDESATKVLCLTEAITTDELMDNEEYEEIVEDMRDECGKFGTLMNVVIPRPN 471
P + ATKVLCLT A++ DEL D+E+YEEI++DMR EC KFG L+NVVIPRP
Sbjct: 519 -----PALV---ATKVLCLTHAVSPDELKDDEDYEEILDDMRQECSKFGNLVNVVIPRPR 570
Query: 472 PSGEQTPGIGKV 483
P GE PG+GKV
Sbjct: 571 PDGELCPGVGKV 582
>Medtr3g005670.3 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313745-308216 | 20130731
Length = 564
Score = 418 bits (1074), Expect = e-117, Method: Compositional matrix adjust.
Identities = 212/351 (60%), Positives = 251/351 (71%), Gaps = 21/351 (5%)
Query: 118 FDMAPPSAD--GTSAVSGQTLGINHLNQGTAQNFSLFGISQPQ-IGALSLMQVQPMTQQA 174
FDMAPP++ G + V+GQ G + G N +Q Q AL ++ VQ MTQQA
Sbjct: 226 FDMAPPTSAILGATGVAGQITGASPAIPGMFPNMFPLPTNQVQPFSALPVLPVQAMTQQA 285
Query: 175 TRHARRVYIGGLPPLTNEQSIATFFSHVMTAIGGNSAGAGDSVVNVYINHEKKFAFLEMR 234
TRHARRVY+GGL P NEQS+ATFFS VM IGGN+AG GD+VVNVYINH+KKFAF+EMR
Sbjct: 286 TRHARRVYVGGLSPTANEQSVATFFSQVMATIGGNTAGPGDAVVNVYINHDKKFAFVEMR 345
Query: 235 TVEEASNAMSLDGIVFEGVSVRVRRPTDYNPTLAAALGPCQPSPYLNLSAVXXXXXXXXX 294
+VEEASNAM+LDGI+FEG V+VRRPTDYNP+LAAALGP QP+P LNL V
Sbjct: 346 SVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLGLVGLSPGSAGG 405
Query: 295 XXXXXRIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTD 354
RIFVGG+PYYF E QIRELL+ FGPLR FDLV+D+ETGNSKGY FC+YQD AVTD
Sbjct: 406 LDGPDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTD 465
Query: 355 MACASLNGLKMGDKTLTVRRA---TVSGHSKTEQEHIFAQAQQNITMQKVALEVVGLNIP 411
+ACA+LNG+KMGDKTLTVRRA T K EQE I AQQ I +QK+ L+
Sbjct: 466 IACAALNGIKMGDKTLTVRRANQNTNPMQPKPEQESILMHAQQQIALQKLMLQ------- 518
Query: 412 GVERVPTTIDESATKVLCLTEAITTDELMDNEEYEEIVEDMRDECGKFGTL 462
P + ATKVLCLT A++ DEL D+E+YEEI++DMR EC KFG +
Sbjct: 519 -----PALV---ATKVLCLTHAVSPDELKDDEDYEEILDDMRQECSKFGNI 561
>Medtr1g041735.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:15688028-15676480 | 20130731
Length = 1071
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/299 (26%), Positives = 138/299 (46%), Gaps = 34/299 (11%)
Query: 173 QATRHARRVYIGGLPPLTNEQSIATFFSHVMTAIGGNSAGAGDSVVNVYINHEKKFAFLE 232
QATR RRVY+ LP +E+ + F++++ + G N ++ ++ ++ A +E
Sbjct: 569 QATRPMRRVYLENLPASASEKVVMDCFNNLLLSSGVNHIQQTRPCISCIVHKDRGQALVE 628
Query: 233 MRTVEEASNAMSLDGIVFEGVSVRVRRPTDYNPTLAAALGPCQPSPYLNLSAVXXXXXXX 292
T E+AS A+S DG G +V+++RP DY +P + ++A
Sbjct: 629 FLTAEDASAALSFDGSKLFGSTVKIKRPKDY-----VEFATDEPERSVEVAAT----ISD 679
Query: 293 XXXXXXXRIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAV 352
+IF+GG+ + + E + E+ FG L+++ G+ F Y D +V
Sbjct: 680 VVVDSPYKIFIGGISNHISSEMLMEIAGVFGFLKAYHFEARVSNGSC---AFVEYVDHSV 736
Query: 353 TDMACASLNGLKMGDKTLTVRRATVSGHSKTEQEHIFAQAQQNITMQKVALEVVGLNIPG 412
T ACA LNG+ +G + LTV QA + + + + IP
Sbjct: 737 TIKACAGLNGMNLGGEVLTV-----------------VQAMPDASPVENDSKPPSYGIP- 778
Query: 413 VERVPTTIDESATKVLCLTEAITTDEL--MDNEEYEEIVEDMRDECGKFGTLMNVVIPR 469
E + E T+VL + T + L + + EEI+ED+R EC +FGT+ ++ + R
Sbjct: 779 -EHAEPLLRE-PTQVLEIKNVFTVESLSSLSDTVIEEILEDVRLECARFGTVKSIHVAR 835
>Medtr1g041735.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:15687990-15676413 | 20130731
Length = 951
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/299 (26%), Positives = 138/299 (46%), Gaps = 34/299 (11%)
Query: 173 QATRHARRVYIGGLPPLTNEQSIATFFSHVMTAIGGNSAGAGDSVVNVYINHEKKFAFLE 232
QATR RRVY+ LP +E+ + F++++ + G N ++ ++ ++ A +E
Sbjct: 449 QATRPMRRVYLENLPASASEKVVMDCFNNLLLSSGVNHIQQTRPCISCIVHKDRGQALVE 508
Query: 233 MRTVEEASNAMSLDGIVFEGVSVRVRRPTDYNPTLAAALGPCQPSPYLNLSAVXXXXXXX 292
T E+AS A+S DG G +V+++RP DY +P + ++A
Sbjct: 509 FLTAEDASAALSFDGSKLFGSTVKIKRPKDY-----VEFATDEPERSVEVAAT----ISD 559
Query: 293 XXXXXXXRIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAV 352
+IF+GG+ + + E + E+ FG L+++ G+ F Y D +V
Sbjct: 560 VVVDSPYKIFIGGISNHISSEMLMEIAGVFGFLKAYHFEARVSNGSC---AFVEYVDHSV 616
Query: 353 TDMACASLNGLKMGDKTLTVRRATVSGHSKTEQEHIFAQAQQNITMQKVALEVVGLNIPG 412
T ACA LNG+ +G + LTV QA + + + + IP
Sbjct: 617 TIKACAGLNGMNLGGEVLTV-----------------VQAMPDASPVENDSKPPSYGIP- 658
Query: 413 VERVPTTIDESATKVLCLTEAITTDEL--MDNEEYEEIVEDMRDECGKFGTLMNVVIPR 469
E + E T+VL + T + L + + EEI+ED+R EC +FGT+ ++ + R
Sbjct: 659 -EHAEPLLRE-PTQVLEIKNVFTVESLSSLSDTVIEEILEDVRLECARFGTVKSIHVAR 715
>Medtr1g041735.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:15687988-15676358 | 20130731
Length = 1109
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/299 (26%), Positives = 138/299 (46%), Gaps = 34/299 (11%)
Query: 173 QATRHARRVYIGGLPPLTNEQSIATFFSHVMTAIGGNSAGAGDSVVNVYINHEKKFAFLE 232
QATR RRVY+ LP +E+ + F++++ + G N ++ ++ ++ A +E
Sbjct: 607 QATRPMRRVYLENLPASASEKVVMDCFNNLLLSSGVNHIQQTRPCISCIVHKDRGQALVE 666
Query: 233 MRTVEEASNAMSLDGIVFEGVSVRVRRPTDYNPTLAAALGPCQPSPYLNLSAVXXXXXXX 292
T E+AS A+S DG G +V+++RP DY +P + ++A
Sbjct: 667 FLTAEDASAALSFDGSKLFGSTVKIKRPKDY-----VEFATDEPERSVEVAAT----ISD 717
Query: 293 XXXXXXXRIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAV 352
+IF+GG+ + + E + E+ FG L+++ G+ F Y D +V
Sbjct: 718 VVVDSPYKIFIGGISNHISSEMLMEIAGVFGFLKAYHFEARVSNGSC---AFVEYVDHSV 774
Query: 353 TDMACASLNGLKMGDKTLTVRRATVSGHSKTEQEHIFAQAQQNITMQKVALEVVGLNIPG 412
T ACA LNG+ +G + LTV QA + + + + IP
Sbjct: 775 TIKACAGLNGMNLGGEVLTV-----------------VQAMPDASPVENDSKPPSYGIP- 816
Query: 413 VERVPTTIDESATKVLCLTEAITTDEL--MDNEEYEEIVEDMRDECGKFGTLMNVVIPR 469
E + E T+VL + T + L + + EEI+ED+R EC +FGT+ ++ + R
Sbjct: 817 -EHAEPLLRE-PTQVLEIKNVFTVESLSSLSDTVIEEILEDVRLECARFGTVKSIHVAR 873
>Medtr1g041735.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:15687988-15678303 | 20130731
Length = 836
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 100/203 (49%), Gaps = 12/203 (5%)
Query: 173 QATRHARRVYIGGLPPLTNEQSIATFFSHVMTAIGGNSAGAGDSVVNVYINHEKKFAFLE 232
QATR RRVY+ LP +E+ + F++++ + G N ++ ++ ++ A +E
Sbjct: 607 QATRPMRRVYLENLPASASEKVVMDCFNNLLLSSGVNHIQQTRPCISCIVHKDRGQALVE 666
Query: 233 MRTVEEASNAMSLDGIVFEGVSVRVRRPTDYNPTLAAALGPCQPSPYLNLSAVXXXXXXX 292
T E+AS A+S DG G +V+++RP DY +P + ++A
Sbjct: 667 FLTAEDASAALSFDGSKLFGSTVKIKRPKDY-----VEFATDEPERSVEVAAT----ISD 717
Query: 293 XXXXXXXRIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAV 352
+IF+GG+ + + E + E+ FG L+++ G+ F Y D +V
Sbjct: 718 VVVDSPYKIFIGGISNHISSEMLMEIAGVFGFLKAYHFEARVSNGSC---AFVEYVDHSV 774
Query: 353 TDMACASLNGLKMGDKTLTVRRA 375
T ACA LNG+ +G + LTV +A
Sbjct: 775 TIKACAGLNGMNLGGEVLTVVQA 797
>Medtr1g097280.1 | cleavage stimulating factor, putative | HC |
chr1:43879642-43873268 | 20130731
Length = 572
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 44/72 (61%)
Query: 301 IFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMACASL 360
+FVG +PY EEQ++E+ + GP+ SF LV D+ETG KGYGFC Y D A +L
Sbjct: 31 VFVGNIPYDATEEQLKEICREVGPVISFRLVTDRETGKPKGYGFCEYTDEETALSARRNL 90
Query: 361 NGLKMGDKTLTV 372
G ++ + L V
Sbjct: 91 QGYEINGRQLRV 102
>Medtr5g070100.1 | RNA recognition motif (RRM) containing protein |
HC | chr5:29707444-29702897 | 20130731
Length = 393
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 44/72 (61%)
Query: 301 IFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMACASL 360
+FVGG+P+ F E + + +G + +LVRDK TG SKG+ F Y+D T++A +L
Sbjct: 38 VFVGGIPFDFTEGDVIAVFAQYGEVVDINLVRDKGTGKSKGFAFIAYEDQRSTNLAVDNL 97
Query: 361 NGLKMGDKTLTV 372
NG ++ + + V
Sbjct: 98 NGAQVSGRIIRV 109
>Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031900 | 20130731
Length = 479
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 19/122 (15%)
Query: 301 IFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMACASL 360
+F+GGLP +++ +REL + G + L++D+ETG SKGY F Y+ V A +
Sbjct: 106 VFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDI 165
Query: 361 NGLKMGDKTL------TVRRATVSGHSKTEQEHIFAQAQQNITMQKVALEVVGLNIPGVE 414
+ + KTL T R + KT E F + A+E VG PGVE
Sbjct: 166 HNKEFKGKTLRCLLSETKHRLFIGNIPKTWTEDEF----------RKAVEGVG---PGVE 212
Query: 415 RV 416
+
Sbjct: 213 SI 214
>Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031887 | 20130731
Length = 479
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 19/122 (15%)
Query: 301 IFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMACASL 360
+F+GGLP +++ +REL + G + L++D+ETG SKGY F Y+ V A +
Sbjct: 106 VFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDI 165
Query: 361 NGLKMGDKTL------TVRRATVSGHSKTEQEHIFAQAQQNITMQKVALEVVGLNIPGVE 414
+ + KTL T R + KT E F + A+E VG PGVE
Sbjct: 166 HNKEFKGKTLRCLLSETKHRLFIGNIPKTWTEDEF----------RKAVEGVG---PGVE 212
Query: 415 RV 416
+
Sbjct: 213 SI 214
>Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025861-49031887 | 20130731
Length = 479
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 19/122 (15%)
Query: 301 IFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMACASL 360
+F+GGLP +++ +REL + G + L++D+ETG SKGY F Y+ V A +
Sbjct: 106 VFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDI 165
Query: 361 NGLKMGDKTL------TVRRATVSGHSKTEQEHIFAQAQQNITMQKVALEVVGLNIPGVE 414
+ + KTL T R + KT E F + A+E VG PGVE
Sbjct: 166 HNKEFKGKTLRCLLSETKHRLFIGNIPKTWTEDEF----------RKAVEGVG---PGVE 212
Query: 415 RV 416
+
Sbjct: 213 SI 214
>Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22250364 | 20130731
Length = 481
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 71/147 (48%), Gaps = 22/147 (14%)
Query: 300 RIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMACAS 359
++F+GG+ + EE+++E +G + ++RD+ TG ++G+GF ++ DPAV +
Sbjct: 7 KLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAER---- 62
Query: 360 LNGLKMGDKTLTVRRATVSGHSKTEQEHIFAQAQQNITMQKVALEVVGLNIPG------V 413
+ + + + G + ++ + QQNI Q +++ G PG V
Sbjct: 63 ----------VIIDKHIIDGRTVEAKKAVPRDDQQNINRQTGSVQ--GSPGPGRTKKIFV 110
Query: 414 ERVPTTIDESATKVLCLTEAITTDELM 440
+P+TI ES K+ TD ++
Sbjct: 111 GGLPSTITESDFKMYFDQFGTITDVVV 137
>Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22251454 | 20130731
Length = 478
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 71/147 (48%), Gaps = 22/147 (14%)
Query: 300 RIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMACAS 359
++F+GG+ + EE+++E +G + ++RD+ TG ++G+GF ++ DPAV +
Sbjct: 7 KLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAER---- 62
Query: 360 LNGLKMGDKTLTVRRATVSGHSKTEQEHIFAQAQQNITMQKVALEVVGLNIPG------V 413
+ + + + G + ++ + QQNI Q +++ G PG V
Sbjct: 63 ----------VIIDKHIIDGRTVEAKKAVPRDDQQNINRQTGSVQ--GSPGPGRTKKIFV 110
Query: 414 ERVPTTIDESATKVLCLTEAITTDELM 440
+P+TI ES K+ TD ++
Sbjct: 111 GGLPSTITESDFKMYFDQFGTITDVVV 137
>Medtr5g064120.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:26612934-26618708 | 20130731
Length = 283
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%)
Query: 300 RIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMACAS 359
++FVGGL + +++R + FG + ++ DK TG SKGYGF ++DP ACA
Sbjct: 17 KVFVGGLAWETPTDEMRTYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRACAD 76
Query: 360 LNGLKMGDK 368
N + G +
Sbjct: 77 PNPVIDGRR 85
>Medtr4g036415.1 | splicing factor-like protein | HC |
chr4:13104578-13109685 | 20130731
Length = 767
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 45/75 (60%)
Query: 301 IFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMACASL 360
+++G LP ++ + +L Q FG + +++D+ TG SKGYGF Y D + + A ++
Sbjct: 453 LYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRITGLSKGYGFVKYADITMANNAIVAM 512
Query: 361 NGLKMGDKTLTVRRA 375
NG ++ +T+ VR A
Sbjct: 513 NGYRLEGRTIAVRVA 527
>Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42754792 | 20130731
Length = 479
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 39/58 (67%)
Query: 300 RIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMAC 357
++F+GG+ + EE++RE +G ++ +++D+ TG ++G+GF ++ DPAV D+
Sbjct: 7 KLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVV 64
>Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42753184 | 20130731
Length = 493
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 39/58 (67%)
Query: 300 RIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMAC 357
++F+GG+ + EE++RE +G ++ +++D+ TG ++G+GF ++ DPAV D+
Sbjct: 7 KLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVV 64
>Medtr7g102730.1 | polyadenylate-binding protein | HC |
chr7:41652502-41656607 | 20130731
Length = 629
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 72/145 (49%), Gaps = 8/145 (5%)
Query: 301 IFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMACASL 360
+++ L +E +RE +FG + S + +D G SKG+GF + +P A ++
Sbjct: 191 LYMKNLDLDISETLLREKFSSFGKIISLAVAKD-SNGMSKGFGFVNFDNPEDAKRAMETM 249
Query: 361 NGLKMGDKTLTVRRATVSGHSKTEQEHIFAQAQQNITMQKVALEVVGLNIPGVERVPTTI 420
NGL++G K L V RA K E+E I Q + ++V L+ G NI V+ + +
Sbjct: 250 NGLQLGSKILYVARA----QKKAEREQILHQQFEEKRKEQV-LKYKGSNI-YVKNIDDNV 303
Query: 421 -DESATKVLCLTEAITTDELMDNEE 444
DE + IT+ ++M +++
Sbjct: 304 SDEGLRDHFSVCGTITSAKIMRDDK 328
>Medtr3g116130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:54300708-54296502 | 20130731
Length = 372
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 300 RIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMACA 358
++FVGGL + E +R + FG + ++ DK TG SKGYGF ++DP ACA
Sbjct: 30 KVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACA 88
>Medtr3g116130.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:54301450-54296178 | 20130731
Length = 281
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 300 RIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMACA 358
++FVGGL + E +R + FG + ++ DK TG SKGYGF ++DP ACA
Sbjct: 30 KVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACA 88
>Medtr3g092490.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253131 | 20130731
Length = 178
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%)
Query: 300 RIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMACAS 359
+IFVGGL + + ++ FG + ++ D+ TG SKGYGF ++DP +AC +
Sbjct: 27 KIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAILACQN 86
Query: 360 LNGLKMGDK 368
N + G +
Sbjct: 87 PNPMIDGRR 95
>Medtr3g092490.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253131 | 20130731
Length = 178
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%)
Query: 300 RIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMACAS 359
+IFVGGL + + ++ FG + ++ D+ TG SKGYGF ++DP +AC +
Sbjct: 27 KIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAILACQN 86
Query: 360 LNGLKMGDK 368
N + G +
Sbjct: 87 PNPMIDGRR 95
>Medtr8g024520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9035953-9039164 | 20130731
Length = 282
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%)
Query: 300 RIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMAC 357
++FVGGL + E +R + FG + ++ DK TG SKGYGF ++DP AC
Sbjct: 26 KLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEAAIRAC 83
>Medtr8g024520.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9035953-9039164 | 20130731
Length = 280
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%)
Query: 300 RIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMAC 357
++FVGGL + E +R + FG + ++ DK TG SKGYGF ++DP AC
Sbjct: 26 KLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEAAIRAC 83
>Medtr3g092490.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251226-42253109 | 20130731
Length = 251
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%)
Query: 300 RIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMACAS 359
+IFVGGL + + ++ FG + ++ D+ TG SKGYGF ++DP +AC +
Sbjct: 27 KIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAILACQN 86
Query: 360 LNGLKMGDK 368
N + G +
Sbjct: 87 PNPMIDGRR 95
>Medtr3g092490.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253164 | 20130731
Length = 250
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%)
Query: 300 RIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMACAS 359
+IFVGGL + + ++ FG + ++ D+ TG SKGYGF ++DP +AC +
Sbjct: 27 KIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAILACQN 86
Query: 360 LNGLKMGDK 368
N + G +
Sbjct: 87 PNPMIDGRR 95
>Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890585-43885643 | 20130731
Length = 434
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%)
Query: 301 IFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMACASL 360
+F+ +P F ++++ Q FG + S + DK TG SK +GF Y P A + +
Sbjct: 351 LFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 410
Query: 361 NGLKMGDKTLTVR 373
NG ++G K L V+
Sbjct: 411 NGCQLGGKKLKVQ 423
>Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26374538-26375597 | 20130731
Length = 128
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 41/76 (53%)
Query: 300 RIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMACAS 359
R FVGGL + E + + +G + ++ D+ETG S+G+GF + + + A +
Sbjct: 7 RCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEA 66
Query: 360 LNGLKMGDKTLTVRRA 375
+NG + + +TV +A
Sbjct: 67 MNGQDLDGRNITVNQA 82
>Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:37290152-37292326 | 20130731
Length = 352
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 41/76 (53%)
Query: 300 RIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMACAS 359
+IFVGG+P +E++++ G + +++RD T S+G+GF ++ D A
Sbjct: 107 KIFVGGIPATVSEDELKIFFSKHGNVVEHEIIRDHTTKRSRGFGFVVFDSDKAVDNLLAD 166
Query: 360 LNGLKMGDKTLTVRRA 375
N + M D + +++A
Sbjct: 167 GNMIDMDDTQVEIKKA 182
>Medtr1g061870.1 | polyadenylate-binding plant protein, putative |
HC | chr1:27029234-27025443 | 20130731
Length = 522
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 88/207 (42%), Gaps = 42/207 (20%)
Query: 301 IFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMACASL 360
++V L E+ + E +FG + S + +D E G SKG+GF Y P A ++
Sbjct: 196 LYVKNLDPVVTEKHLGEKFSSFGKIVSLAIKKD-ENGQSKGFGFVNYDSPDDARRAMEAM 254
Query: 361 NGLKMGDKTLTVRRATVSGHSKTEQEHIFAQAQQNITMQKVALEVVGLNIPGVERVPTTI 420
+G + G K L V RA K E+E I ++ ++K L+ +G NI V+ + T++
Sbjct: 255 DGSQFGSKILYVARA----QKKVEREQIL----HHLFVEK-GLKHMGSNIY-VKNIDTSV 304
Query: 421 DESATKVLCLTEAITTDELMDNEEYEEIVEDMRDECGKFGTLMNVVIPRPNPSGEQTPGI 480
+ E++RD G +++ + R + + G
Sbjct: 305 GD---------------------------EELRDHFSACGEVLSAKVMRDDKG--TSKGF 335
Query: 481 GKVFLEYSDTAASFAAKSALNGRKFGG 507
G F+ +S +F + S NG F G
Sbjct: 336 G--FVCFSTVVEAFKSMSCFNGCMFHG 360
>Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890650-43885583 | 20130731
Length = 433
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%)
Query: 301 IFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMACASL 360
+F+ +P F ++++ Q FG + S + DK TG SK +GF Y P A + +
Sbjct: 350 LFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 409
Query: 361 NGLKMGDKTLTVR 373
NG ++G K L V+
Sbjct: 410 NGCQLGGKKLKVQ 422
>Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 37/55 (67%)
Query: 300 RIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTD 354
++F+GG+ + EE+++E +G + + ++R+K TG +G+GF ++ DP+V D
Sbjct: 7 KLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLD 61
>Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 37/55 (67%)
Query: 300 RIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTD 354
++F+GG+ + EE+++E +G + + ++R+K TG +G+GF ++ DP+V D
Sbjct: 7 KLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLD 61
>Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26418780-26419998 | 20130731
Length = 164
Score = 49.3 bits (116), Expect = 9e-06, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 38/76 (50%)
Query: 300 RIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMACAS 359
R FVGGL + E + + +G + ++ D+ETG S+G+GF + D A
Sbjct: 9 RCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEG 68
Query: 360 LNGLKMGDKTLTVRRA 375
+NG M + +TV A
Sbjct: 69 MNGQDMDGRNITVNEA 84
>Medtr1g097440.2 | polyadenylate-binding protein | HC |
chr1:43966152-43970565 | 20130731
Length = 646
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 2/116 (1%)
Query: 301 IFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMACASL 360
+++ L F EE++++L FG + S ++ D G+SKG GF + P + A +
Sbjct: 315 LYLKNLDDDFNEEKLKDLFSEFGTVTSCRVMLDSH-GHSKGSGFVAFSTPEEANKALNEM 373
Query: 361 NGLKMGDKTLTVRRATVSGHSKTEQEHIFAQAQQNITMQKVALEVVGLNIPGVERV 416
NG +G K L V A K + + FAQ + M +A E+ G + PG R+
Sbjct: 374 NGKLVGRKPLFVAVAQRKEERKAQLQAHFAQIRAPGGMAPLAAELTGYH-PGAPRL 428
>Medtr1g097440.1 | polyadenylate-binding protein | HC |
chr1:43966161-43970565 | 20130731
Length = 646
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 2/116 (1%)
Query: 301 IFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMACASL 360
+++ L F EE++++L FG + S ++ D G+SKG GF + P + A +
Sbjct: 315 LYLKNLDDDFNEEKLKDLFSEFGTVTSCRVMLDSH-GHSKGSGFVAFSTPEEANKALNEM 373
Query: 361 NGLKMGDKTLTVRRATVSGHSKTEQEHIFAQAQQNITMQKVALEVVGLNIPGVERV 416
NG +G K L V A K + + FAQ + M +A E+ G + PG R+
Sbjct: 374 NGKLVGRKPLFVAVAQRKEERKAQLQAHFAQIRAPGGMAPLAAELTGYH-PGAPRL 428