Miyakogusa Predicted Gene
- Lj6g3v2019730.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v2019730.1 Non Characterized Hit- tr|I1JZZ5|I1JZZ5_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,36.91,8e-19,HLH,Helix-loop-helix domain; HLH, helix-loop-helix
DNA-binding domain,Helix-loop-helix domain; coile,CUFF.60532.1
(180 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr2g013920.1 | helix loop helix DNA-binding domain protein | ... 253 9e-68
Medtr2g090480.1 | helix loop helix DNA-binding domain protein | ... 138 4e-33
Medtr4g078350.1 | helix loop helix DNA-binding domain protein | ... 135 2e-32
Medtr2g090440.1 | helix loop helix DNA-binding domain protein | ... 135 3e-32
Medtr2g090425.1 | helix loop helix DNA-binding domain protein | ... 131 4e-31
Medtr2g090500.1 | hypothetical protein | LC | chr2:38618879-3861... 101 4e-22
Medtr0007s0330.2 | transcription factor | HC | scaffold0007:1961... 55 4e-08
Medtr0007s0330.1 | transcription factor | HC | scaffold0007:1961... 53 1e-07
Medtr0007s0380.1 | transcription factor | HC | scaffold0007:2188... 53 2e-07
Medtr1g102370.1 | transcription factor | HC | chr1:46230813-4622... 52 4e-07
Medtr1g102380.1 | transcription factor bHLH120-like protein, put... 50 1e-06
Medtr2g090515.1 | helix loop helix DNA-binding domain protein | ... 49 2e-06
>Medtr2g013920.1 | helix loop helix DNA-binding domain protein | HC
| chr2:3826720-3828487 | 20130731
Length = 174
Score = 253 bits (645), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 126/172 (73%), Positives = 145/172 (84%), Gaps = 1/172 (0%)
Query: 1 MDNNPSSSRVDRKVIERNRRNQMRTLYRKLNSLVLHQTSKEAISLPDQLEEATNYIKRLQ 60
M+NNPSSSRVDRK +ERNRRNQM+ L +KLNSL+ HQTSKEAIS+PDQL+EATNYIK+LQ
Sbjct: 1 MENNPSSSRVDRKFVERNRRNQMKALCQKLNSLLPHQTSKEAISVPDQLKEATNYIKKLQ 60
Query: 61 VNLEKMKEKKNTLLGIERPNVMSLKEGPSMGLKSPKIEIQQMGSALDVVLITGSDCQFMF 120
+NLEKMKEKKN LLGI+RPNV +L MGLKSPKI+IQQ+G L+VVLITG + QF+F
Sbjct: 61 INLEKMKEKKNFLLGIQRPNV-NLNRNQKMGLKSPKIKIQQIGLVLEVVLITGLESQFLF 119
Query: 121 NETIRVLHEEGVDVVNASYKVIEGSAFHSIHCLVTGSANVAERISERLNKFI 172
+ET RVLHEEGVD+VNASYKV E S FHSIHC V N A RISERL KF+
Sbjct: 120 SETFRVLHEEGVDIVNASYKVNEDSVFHSIHCQVGEFGNEAARISERLKKFM 171
>Medtr2g090480.1 | helix loop helix DNA-binding domain protein | LC
| chr2:38605874-38608239 | 20130731
Length = 219
Score = 138 bits (347), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 81/185 (43%), Positives = 117/185 (63%), Gaps = 10/185 (5%)
Query: 1 MDNN-----PSSS-RVDRKVIERNRRNQMRTLYRKLNSLVLHQTSKE-AISLPDQLEEAT 53
MD N PSSS +V+RK++E+NRRNQM+ L+ LNSL+ KE A+ LPDQ++EA
Sbjct: 1 MDQNQQGGRPSSSTKVERKIVEKNRRNQMKILFSNLNSLLPSYNPKELALPLPDQVDEAI 60
Query: 54 NYIKRLQVNLEKMKEKKNTLLGIERP-NVMSLKEGPSMGLKSPKIEIQQMGSALDVVLIT 112
NYIKRL+ N++ KEKK +L+G +R S G +K PKIEI +MG L +++
Sbjct: 61 NYIKRLETNIKLAKEKKESLMGNKRSRGDCSSSSGAKGIIKLPKIEIHEMGPTLQIIVTC 120
Query: 113 GSDCQFMFNETIRVLHEEGVDVVNASYKVIEGSAFHSIHCLVTGS-ANVAE-RISERLNK 170
G D F+F E +R+LHEE V+V++++ + S H++H + S E +ISERL
Sbjct: 121 GVDEHFIFCEIMRILHEENVEVISSNTSLTGHSLLHTVHAQIPQSLLQFGETKISERLKA 180
Query: 171 FIYGS 175
F+ GS
Sbjct: 181 FVNGS 185
>Medtr4g078350.1 | helix loop helix DNA-binding domain protein | HC
| chr4:30195137-30195963 | 20130731
Length = 208
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 84/186 (45%), Positives = 117/186 (62%), Gaps = 20/186 (10%)
Query: 3 NNPSSS---RVDRKVIERNRRNQMRTLYRKLNSLVLHQTSKE-AISLPDQLEEATNYIKR 58
+ PSSS +V+R+++E+NRRNQM+ LY KLNSL+ + KE ++LPDQ++EA NYIK
Sbjct: 7 DQPSSSNTTKVERRLVEKNRRNQMKILYSKLNSLLPNYNPKELPLALPDQVDEAINYIKS 66
Query: 59 LQVNLEKMKEKKNTLLGIE----RPNVMSLKEGPSMGLKSPKIEIQQMGSALDVVLITGS 114
L+ N++ EKK LL + R + L KSP EI ++GS+L ++L G
Sbjct: 67 LEANVQMAMEKKERLLAGKNKRSREYCLDLP-------KSPCFEIHEIGSSLQIILTCGL 119
Query: 115 DCQFMFNETIRVLHEEGVDV--VNASYKVIEGSAFHSIHCLVTGSANV--AERISERLNK 170
D QF+F E IRVLHEE VD+ VN+S KV + S H +H + S A ++SERL
Sbjct: 120 DNQFIFYEIIRVLHEENVDIRSVNSS-KVGDNSLLHVVHAEIPPSCVQFGATKVSERLKS 178
Query: 171 FIYGSS 176
F+YGSS
Sbjct: 179 FVYGSS 184
>Medtr2g090440.1 | helix loop helix DNA-binding domain protein | LC
| chr2:38580669-38583058 | 20130731
Length = 217
Score = 135 bits (339), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 78/184 (42%), Positives = 119/184 (64%), Gaps = 10/184 (5%)
Query: 1 MDNN-----PSSS-RVDRKVIERNRRNQMRTLYRKLNSLVLHQTSKE-AISLPDQLEEAT 53
MD+N PSSS +V+RK++E+NRRNQM+ L+ LNS++ KE A+ LPDQ++EA
Sbjct: 1 MDHNQQGGQPSSSTKVERKIVEKNRRNQMKILFSNLNSILPSYNPKELALPLPDQVDEAI 60
Query: 54 NYIKRLQVNLEKMKEKKNTLLGIERPNVMSLKEGPSMGLKSPKIEIQQMGSALDVVLITG 113
NYIK L+ NL+ KEKK +L+G ++ + S+ +K PKIEI +MGS L V++ G
Sbjct: 61 NYIKSLETNLKGAKEKKESLMGNKKRSRGGYGAKGSI-IKLPKIEIHEMGSTLQVIVTCG 119
Query: 114 SDCQFMFNETIRVLHEEGVDVVNASYKVIEGSAFHSIHCLVTGS--ANVAERISERLNKF 171
D F+F E +R+LHEE V+V++++ + S H++H + + A +IS+RL F
Sbjct: 120 VDEHFIFCEIMRILHEENVEVISSNSSLTGDSLLHTVHAQIPQTLLQFGAMKISQRLKAF 179
Query: 172 IYGS 175
+ GS
Sbjct: 180 VNGS 183
>Medtr2g090425.1 | helix loop helix DNA-binding domain protein | LC
| chr2:38561453-38566915 | 20130731
Length = 327
Score = 131 bits (329), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 78/186 (41%), Positives = 118/186 (63%), Gaps = 11/186 (5%)
Query: 1 MDNN-----PSSS-RVDRKVIERNRRNQMRTLYRKLNSLVLHQTSKE-AISLPDQLEEAT 53
MD N PSSS +V+RK++E+NRRNQM+ L+ KLNSL+ KE A+ LPDQ++EA
Sbjct: 1 MDQNQQGGRPSSSTKVERKIVEKNRRNQMKILFSKLNSLLPSYNQKELALPLPDQVDEAI 60
Query: 54 NYIKRLQVNLEKMKEKKNTLLGIERPNV--MSLKEGPSMGLKSPKIEIQQMGSALDVVLI 111
NYIK L++N++ KEKK +L+G ++ + S G ++ PKIEI ++G L V++
Sbjct: 61 NYIKSLEINIKLAKEKKESLMGNKKRSRGGWSSSYGAKGSIELPKIEIHEIGPTLQVIVT 120
Query: 112 TGSDCQFMFNETIRVLHEEGVDVVNASYKVIEGSAFHSIHCLVTGS-ANVAE-RISERLN 169
G D F+F E +R+LHEE VDV++++ + S H++ + S E +IS+RL
Sbjct: 121 CGVDEHFIFCEIMRILHEENVDVISSNSSLAGDSLLHTVLAQIPQSLLQFGETKISKRLK 180
Query: 170 KFIYGS 175
F+ GS
Sbjct: 181 AFVDGS 186
>Medtr2g090500.1 | hypothetical protein | LC |
chr2:38618879-38616410 | 20130731
Length = 230
Score = 101 bits (251), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 88/140 (62%), Gaps = 3/140 (2%)
Query: 38 TSKEAISLPDQLEEATNYIKRLQVNLEKMKEKKNTLLGIERPNVMSLKEGPSMGLKSPKI 97
T +EA+ LPDQ++EA NYIK L+ N+ KEKK +L+G ++ + S+ +K PKI
Sbjct: 58 TVEEALPLPDQVDEAINYIKSLETNIMLAKEKKESLMGNKKRSRGGYGAKGSI-IKLPKI 116
Query: 98 EIQQMGSALDVVLITGSDCQFMFNETIRVLHEEGVDVVNASYKVIEGSAFHSIHCLVTGS 157
EI +MG L V++ G D F+F E +R+LHEE V+V++++ + S H++H + +
Sbjct: 117 EIHEMGPTLQVIVTCGVDKHFIFCEIMRILHEENVEVISSNSSLTGDSLLHTVHAQIPQT 176
Query: 158 --ANVAERISERLNKFIYGS 175
A +ISERL +F+ GS
Sbjct: 177 LLQFGATKISERLKEFVNGS 196
>Medtr0007s0330.2 | transcription factor | HC |
scaffold0007:196156-194510 | 20130731
Length = 163
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 77/150 (51%), Gaps = 2/150 (1%)
Query: 13 KVIERNRRNQMRTLYRKLNSLVLHQTSKEAISLPDQLEEATNYIKRLQVNLEKMKEKKNT 72
K ER RR +M L L SL+ + K S+ D + EA +YI LQ ++++++KK
Sbjct: 11 KETERQRRQEMSNLCTNLRSLLPIEYIKGKRSISDHVNEAMHYINHLQNKVKQLQDKKEE 70
Query: 73 LLGIER-PNVMSLKEGPSMGLKSPKIEIQQMGSALDVVL-ITGSDCQFMFNETIRVLHEE 130
L+ + ++ + G S P + +Q L++V + + C F + + +L +E
Sbjct: 71 LMKVSNLSRNVTTQNGSSSSNIQPFVIVQPFPGGLEIVCSYSFNKCLFPLSRVLSMLLKE 130
Query: 131 GVDVVNASYKVIEGSAFHSIHCLVTGSANV 160
G+++++ + +IEG ++I V + ++
Sbjct: 131 GLNLISCTSNMIEGRFIYTIRSEVNSACSI 160
>Medtr0007s0330.1 | transcription factor | HC |
scaffold0007:196183-192795 | 20130731
Length = 204
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 73/140 (52%), Gaps = 2/140 (1%)
Query: 13 KVIERNRRNQMRTLYRKLNSLVLHQTSKEAISLPDQLEEATNYIKRLQVNLEKMKEKKNT 72
K ER RR +M L L SL+ + K S+ D + EA +YI LQ ++++++KK
Sbjct: 23 KETERQRRQEMSNLCTNLRSLLPIEYIKGKRSISDHVNEAMHYINHLQNKVKQLQDKKEE 82
Query: 73 LLGIER-PNVMSLKEGPSMGLKSPKIEIQQMGSALDVVL-ITGSDCQFMFNETIRVLHEE 130
L+ + ++ + G S P + +Q L++V + + C F + + +L +E
Sbjct: 83 LMKVSNLSRNVTTQNGSSSSNIQPFVIVQPFPGGLEIVCSYSFNKCLFPLSRVLSMLLKE 142
Query: 131 GVDVVNASYKVIEGSAFHSI 150
G+++++ + +IEG ++I
Sbjct: 143 GLNLISCTSNMIEGRFIYTI 162
>Medtr0007s0380.1 | transcription factor | HC |
scaffold0007:218856-222903 | 20130731
Length = 239
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 77/160 (48%), Gaps = 6/160 (3%)
Query: 9 RVDRKVIERNRRNQMRTLYRKLNSLVLHQTSKEAISLPDQLEEATNYIKRLQVNLEKMKE 68
++ + IER RR +M T Y L SL+ + K S+ D + EA NYIK +Q N+ ++
Sbjct: 72 KIVHREIERQRRQEMATYYASLRSLLPLEFIKGKRSISDHMNEAVNYIKHMQNNINELGT 131
Query: 69 KKNTLLGIERPNVMSLKEGPSMGLKSPKIEIQQMGSALDVVLITG-SDCQFMFNETIRVL 127
K++ L + + +++ + S + +QQ L + +G + + ++ + L
Sbjct: 132 KRDELKKLSNSKLENIESNHA----SCNLNVQQNNGILRIEFTSGLREEKLKLSQLLNFL 187
Query: 128 HEEGVDVVNASYKVIEGSAFHSIHCLVTGSANVAERISER 167
+EG +V + I G S+ C V S N+ ++ R
Sbjct: 188 AKEGFEVDSCVTTEINGRLLQSVMCEVNNS-NIVDQFELR 226
>Medtr1g102370.1 | transcription factor | HC |
chr1:46230813-46229149 | 20130731
Length = 244
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 71/151 (47%), Gaps = 13/151 (8%)
Query: 15 IERNRRNQMRTLYRKLNSLVLHQTSKEAISLPDQLEEATNYIKRLQVNLEKMKEKKNTLL 74
IE+ RR +M TL+ L SL+ K SL DQ+ EA NYI L+ N++++ K++ L
Sbjct: 82 IEKQRRQEMATLHTSLRSLLPLHFIKGKRSLSDQMNEAVNYINHLKKNMKELSYKRDELK 141
Query: 75 GIERPNVMSLKEGPSMGLKSPKIEIQQMGSALDVVLITGSDCQFM-----FNETIRVLHE 129
+ P SLK + S I +++ TG F+ ++ + L
Sbjct: 142 KLSNP---SLKNKSHVSC-SFTIHKNNRTVGIEISTKTG----FIEEGAPLSKFLEQLMR 193
Query: 130 EGVDVVNASYKVIEGSAFHSIHCLVTGSANV 160
G+DVV+ + G HS+ C V S +V
Sbjct: 194 YGLDVVSCFSIQVNGKLLHSVQCEVINSDSV 224
>Medtr1g102380.1 | transcription factor bHLH120-like protein,
putative | HC | chr1:46235719-46236971 | 20130731
Length = 191
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 75/147 (51%), Gaps = 13/147 (8%)
Query: 12 RKVIERNRRNQMRTLYRKLNSLVLHQTSKEAISLPDQLEEATNYIK-------RLQVNLE 64
R+ +E+ RR QM L L S + K S+ D + EA NY++ L++ +
Sbjct: 23 RREVEKQRRMQMSILCSSLRSSLPFDLIKGKRSVSDHIGEAANYVQILKQKINELEIKRD 82
Query: 65 KMKEKKNTLLGIERPNVMSLKEGPSMGLKSPKIEIQQMGSALDVVLITG-SDCQFMFNET 123
KMKE ++ +E N +S PS +K KI++ + +++V+ +G D ++
Sbjct: 83 KMKEMVSSS-RVETGNELS--ADPSSVVKCVKIDL--IPGGVEIVICSGLEDYSSRLSDL 137
Query: 124 IRVLHEEGVDVVNASYKVIEGSAFHSI 150
++++ +EG DVV+ + G FH+I
Sbjct: 138 MKIILQEGCDVVHCVTNQVNGKIFHTI 164
>Medtr2g090515.1 | helix loop helix DNA-binding domain protein |
LC | chr2:38622456-38621987 | 20130731
Length = 81
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 30/36 (83%)
Query: 5 PSSSRVDRKVIERNRRNQMRTLYRKLNSLVLHQTSK 40
PSS++V+RKV+E+NRRNQM+ LY KLNSL+ SK
Sbjct: 10 PSSTKVERKVVEKNRRNQMKILYSKLNSLLPSYNSK 45