Miyakogusa Predicted Gene

Lj6g3v2017410.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2017410.1 Non Characterized Hit- tr|B4FQ41|B4FQ41_MAIZE
Uncharacterized protein OS=Zea mays PE=4
SV=1,58.88,3e-19,Auxin_repressed,Dormancyauxin associated;
seg,NULL,CUFF.61054.1
         (113 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g014240.1 | auxin-repressed/dormancy-associated protein | ...   152   5e-38
Medtr2g014240.2 | auxin-repressed/dormancy-associated protein | ...   148   1e-36
Medtr2g014240.3 | auxin-repressed/dormancy-associated protein | ...   132   9e-32
Medtr1g083440.1 | dormancy/auxin associated protein | HC | chr1:...    46   6e-06

>Medtr2g014240.1 | auxin-repressed/dormancy-associated protein | HC
           | chr2:3988602-3986182 | 20130731
          Length = 112

 Score =  152 bits (385), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 76/112 (67%), Positives = 84/112 (75%), Gaps = 1/112 (0%)

Query: 3   LLEKLWDDVVAGPQPERGLGALRKLTTNI-KDEGEGSKLQRNLSMXXXXXXXXXXXXXXS 61
           +L+KLWDD VAGPQPERGL  LRKLTT+I KDEG   +L RN S+              S
Sbjct: 1   MLDKLWDDTVAGPQPERGLEKLRKLTTSIIKDEGGSGQLMRNTSLPSTPTTPVTPTTPQS 60

Query: 62  GRKADNVWRSVFHPGSNSATKTIGGQMFDKPLPNTPTVYDWLYSGETRSKHR 113
            RK DNVWRSVF+PGSNSATKTIG   FDKPLPNTPTVYDW+YSG+TRSKHR
Sbjct: 61  ARKVDNVWRSVFNPGSNSATKTIGADKFDKPLPNTPTVYDWMYSGDTRSKHR 112


>Medtr2g014240.2 | auxin-repressed/dormancy-associated protein | HC
           | chr2:3988350-3986641 | 20130731
          Length = 110

 Score =  148 bits (373), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 74/111 (66%), Positives = 82/111 (73%), Gaps = 1/111 (0%)

Query: 3   LLEKLWDDVVAGPQPERGLGALRKLTTNIKDEGEGSKLQRNLSMXXXXXXXXXXXXXXSG 62
           +L+KLWDD VAGPQPERGL  LRKLTT+I   G G +L RN S+              S 
Sbjct: 1   MLDKLWDDTVAGPQPERGLEKLRKLTTSIIKGGSG-QLMRNTSLPSTPTTPVTPTTPQSA 59

Query: 63  RKADNVWRSVFHPGSNSATKTIGGQMFDKPLPNTPTVYDWLYSGETRSKHR 113
           RK DNVWRSVF+PGSNSATKTIG   FDKPLPNTPTVYDW+YSG+TRSKHR
Sbjct: 60  RKVDNVWRSVFNPGSNSATKTIGADKFDKPLPNTPTVYDWMYSGDTRSKHR 110


>Medtr2g014240.3 | auxin-repressed/dormancy-associated protein | HC
           | chr2:3988482-3986182 | 20130731
          Length = 109

 Score =  132 bits (331), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 67/101 (66%), Positives = 73/101 (72%), Gaps = 1/101 (0%)

Query: 3   LLEKLWDDVVAGPQPERGLGALRKLTTNI-KDEGEGSKLQRNLSMXXXXXXXXXXXXXXS 61
           +L+KLWDD VAGPQPERGL  LRKLTT+I KDEG   +L RN S+              S
Sbjct: 1   MLDKLWDDTVAGPQPERGLEKLRKLTTSIIKDEGGSGQLMRNTSLPSTPTTPVTPTTPQS 60

Query: 62  GRKADNVWRSVFHPGSNSATKTIGGQMFDKPLPNTPTVYDW 102
            RK DNVWRSVF+PGSNSATKTIG   FDKPLPNTPTVYDW
Sbjct: 61  ARKVDNVWRSVFNPGSNSATKTIGADKFDKPLPNTPTVYDW 101


>Medtr1g083440.1 | dormancy/auxin associated protein | HC |
          chr1:37135518-37137717 | 20130731
          Length = 128

 Score = 46.2 bits (108), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 30/47 (63%), Gaps = 6/47 (12%)

Query: 1  MVLLEKLWDDVVAGPQPERGLGALRKLTT------NIKDEGEGSKLQ 41
          M +L+ LWDD VAGP+PE GLG LRK  T      + K+ GEG  ++
Sbjct: 1  MSILDHLWDDTVAGPRPENGLGKLRKHPTFPTRSISDKESGEGGNVR 47