Miyakogusa Predicted Gene

Lj6g3v2007020.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2007020.1 Non Characterized Hit- tr|I3SCF8|I3SCF8_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,98.67,0,seg,NULL;
no description,Nucleic acid-binding, OB-fold; Nucleic acid-binding
proteins,Nucleic acid-b,CUFF.60500.1
         (150 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g014360.1 | nucleic acid-binding, OB-fold-like protein | H...   221   3e-58
Medtr2g090635.1 | nucleic acid-binding, OB-fold-like protein | H...   194   2e-50
Medtr8g064590.2 | nucleic acid-binding, OB-fold-like protein | H...   176   1e-44
Medtr8g064590.1 | nucleic acid-binding, OB-fold-like protein | H...   176   1e-44
Medtr5g034290.1 | nucleic acid-binding, OB-fold-like protein | H...   169   8e-43
Medtr5g034290.2 | nucleic acid-binding, OB-fold-like protein | H...   169   1e-42
Medtr6g060020.1 | nucleic acid-binding, OB-fold-like protein | H...   119   1e-27
Medtr2g090640.1 | DUF4283 domain protein | LC | chr2:38791614-38...    80   8e-16
Medtr5g083900.1 | nucleic acid-binding, OB-fold-like protein, pu...    75   2e-14
Medtr5g083870.1 | nucleic acid-binding, OB-fold-like protein | L...    75   3e-14

>Medtr2g014360.1 | nucleic acid-binding, OB-fold-like protein | HC |
           chr2:4084047-4086138 | 20130731
          Length = 152

 Score =  221 bits (562), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 108/152 (71%), Positives = 124/152 (81%), Gaps = 2/152 (1%)

Query: 1   MASN--VEEGNTNKPAKRKPVFTKVDQLKPGTNGHTLVAKVLSSDTVLHKXXXXXXXXXX 58
           MAS+  V + +  KPAKRKP FTKVDQ+KPGTNGHTL+AKVL+S+TVL K          
Sbjct: 1   MASSNVVSQEDGTKPAKRKPTFTKVDQMKPGTNGHTLIAKVLTSETVLQKGGGTRPSSSS 60

Query: 59  XQNIRPTVIAECLIGDDTATVIFTARNEQVELMKPGTTVIIRNAKIDMFKGSIRLAVDKW 118
              +RPT+I+ECLIGD+T T+IFTARNEQVELMK G TVIIRN+KIDMFKGS+RLAVDKW
Sbjct: 61  RGIVRPTLISECLIGDETGTIIFTARNEQVELMKAGNTVIIRNSKIDMFKGSMRLAVDKW 120

Query: 119 GRIEVTEPANFVVKEDTNLSQVEYELVNVVEE 150
           GRIEVT+PA FVVKED NLS +EYELVN VEE
Sbjct: 121 GRIEVTDPAEFVVKEDNNLSLIEYELVNAVEE 152


>Medtr2g090635.1 | nucleic acid-binding, OB-fold-like protein | HC |
           chr2:38787156-38789810 | 20130731
          Length = 140

 Score =  194 bits (494), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 97/137 (70%), Positives = 110/137 (80%), Gaps = 2/137 (1%)

Query: 14  AKRKPVFTKVDQLKPGTNGHTLVAKVLSSDTVLHKXXXXXXXXXXXQNIRPTVIAECLIG 73
           AKRKPVF KVDQLKPGTNGHTL  KV++S  V  K              RP+ IAEC+IG
Sbjct: 6   AKRKPVFVKVDQLKPGTNGHTLTVKVVNSSPV--KTIPNRGGRSAVIASRPSRIAECVIG 63

Query: 74  DDTATVIFTARNEQVELMKPGTTVIIRNAKIDMFKGSIRLAVDKWGRIEVTEPANFVVKE 133
           D+TA++IFTARNEQV+LM PG T+I+RNAKIDMFKGS+RLAVD+WGRIEVTEPANF V+E
Sbjct: 64  DETASIIFTARNEQVDLMNPGATLILRNAKIDMFKGSMRLAVDRWGRIEVTEPANFEVRE 123

Query: 134 DTNLSQVEYELVNVVEE 150
           D NLS VEYELVNVVEE
Sbjct: 124 DNNLSLVEYELVNVVEE 140


>Medtr8g064590.2 | nucleic acid-binding, OB-fold-like protein | HC |
           chr8:27116410-27113210 | 20130731
          Length = 136

 Score =  176 bits (445), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 85/138 (61%), Positives = 106/138 (76%), Gaps = 6/138 (4%)

Query: 12  KPAKRKPVFTKVDQLKPGTNGHTLVAKVLSSDTVLHKXXXXXXXXXXXQNIRPTVIAECL 71
           KP  RKP FTKV+QL+PGT+GHTL  KV+++  V+ K              R   IAE L
Sbjct: 5   KPGLRKPTFTKVEQLRPGTSGHTLTVKVVNTKMVMQKGRPDGPQP------RQMRIAESL 58

Query: 72  IGDDTATVIFTARNEQVELMKPGTTVIIRNAKIDMFKGSIRLAVDKWGRIEVTEPANFVV 131
           +GD+T  +IFTARN+QV+L+K G+T+I+RNAKIDMFKGS+RLAVDKWGR+EVT+PA+F V
Sbjct: 59  VGDETGMIIFTARNDQVDLLKDGSTIILRNAKIDMFKGSMRLAVDKWGRVEVTDPADFTV 118

Query: 132 KEDTNLSQVEYELVNVVE 149
           KED NLS +EYELVNVVE
Sbjct: 119 KEDNNLSLIEYELVNVVE 136


>Medtr8g064590.1 | nucleic acid-binding, OB-fold-like protein | HC |
           chr8:27116409-27113327 | 20130731
          Length = 136

 Score =  176 bits (445), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 85/138 (61%), Positives = 106/138 (76%), Gaps = 6/138 (4%)

Query: 12  KPAKRKPVFTKVDQLKPGTNGHTLVAKVLSSDTVLHKXXXXXXXXXXXQNIRPTVIAECL 71
           KP  RKP FTKV+QL+PGT+GHTL  KV+++  V+ K              R   IAE L
Sbjct: 5   KPGLRKPTFTKVEQLRPGTSGHTLTVKVVNTKMVMQKGRPDGPQP------RQMRIAESL 58

Query: 72  IGDDTATVIFTARNEQVELMKPGTTVIIRNAKIDMFKGSIRLAVDKWGRIEVTEPANFVV 131
           +GD+T  +IFTARN+QV+L+K G+T+I+RNAKIDMFKGS+RLAVDKWGR+EVT+PA+F V
Sbjct: 59  VGDETGMIIFTARNDQVDLLKDGSTIILRNAKIDMFKGSMRLAVDKWGRVEVTDPADFTV 118

Query: 132 KEDTNLSQVEYELVNVVE 149
           KED NLS +EYELVNVVE
Sbjct: 119 KEDNNLSLIEYELVNVVE 136


>Medtr5g034290.1 | nucleic acid-binding, OB-fold-like protein | HC |
           chr5:14839397-14843757 | 20130731
          Length = 168

 Score =  169 bits (428), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 86/145 (59%), Positives = 103/145 (71%), Gaps = 20/145 (13%)

Query: 11  NKPAKRKPVFTKVDQLKPGTNGHTLVAKVLSSDTVLHKXXXXXXXXXXXQNIRP------ 64
           +KPA RKPVF KVDQL PGT GHT++ KV+S   V              QN RP      
Sbjct: 37  SKPALRKPVFCKVDQLLPGTRGHTIIVKVVSVKLV-------------DQNDRPDGLKLR 83

Query: 65  -TVIAECLIGDDTATVIFTARNEQVELMKPGTTVIIRNAKIDMFKGSIRLAVDKWGRIEV 123
              +AECL+GD+T T+IFTAR+EQV+LM  G+T+I+RNAKIDMFKG++RL VD WGRIE+
Sbjct: 84  HMRMAECLVGDETGTIIFTARHEQVDLMTEGSTIIVRNAKIDMFKGTMRLGVDVWGRIEL 143

Query: 124 TEPANFVVKEDTNLSQVEYELVNVV 148
           TEPA F VKED NLS +EYELVN V
Sbjct: 144 TEPAAFTVKEDNNLSLIEYELVNAV 168


>Medtr5g034290.2 | nucleic acid-binding, OB-fold-like protein | HC |
           chr5:14840270-14843747 | 20130731
          Length = 135

 Score =  169 bits (428), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 86/145 (59%), Positives = 103/145 (71%), Gaps = 20/145 (13%)

Query: 11  NKPAKRKPVFTKVDQLKPGTNGHTLVAKVLSSDTVLHKXXXXXXXXXXXQNIRP------ 64
           +KPA RKPVF KVDQL PGT GHT++ KV+S   V              QN RP      
Sbjct: 4   SKPALRKPVFCKVDQLLPGTRGHTIIVKVVSVKLV-------------DQNDRPDGLKLR 50

Query: 65  -TVIAECLIGDDTATVIFTARNEQVELMKPGTTVIIRNAKIDMFKGSIRLAVDKWGRIEV 123
              +AECL+GD+T T+IFTAR+EQV+LM  G+T+I+RNAKIDMFKG++RL VD WGRIE+
Sbjct: 51  HMRMAECLVGDETGTIIFTARHEQVDLMTEGSTIIVRNAKIDMFKGTMRLGVDVWGRIEL 110

Query: 124 TEPANFVVKEDTNLSQVEYELVNVV 148
           TEPA F VKED NLS +EYELVN V
Sbjct: 111 TEPAAFTVKEDNNLSLIEYELVNAV 135


>Medtr6g060020.1 | nucleic acid-binding, OB-fold-like protein | HC |
           chr6:20603676-20603377 | 20130731
          Length = 99

 Score =  119 bits (298), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 54/84 (64%), Positives = 71/84 (84%)

Query: 66  VIAECLIGDDTATVIFTARNEQVELMKPGTTVIIRNAKIDMFKGSIRLAVDKWGRIEVTE 125
           ++A  L+GD+T  +IFTARN++V L+K G+T+I+RNAKID+FKGS+ L VDKWGR+EVT+
Sbjct: 16  MLAGSLVGDETRMIIFTARNDKVNLLKDGSTIILRNAKIDIFKGSMWLVVDKWGRVEVTD 75

Query: 126 PANFVVKEDTNLSQVEYELVNVVE 149
             NF VK+D NLS +EYELVNVVE
Sbjct: 76  LTNFTVKDDNNLSLIEYELVNVVE 99


>Medtr2g090640.1 | DUF4283 domain protein | LC |
           chr2:38791614-38794576 | 20130731
          Length = 543

 Score = 80.1 bits (196), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 42/81 (51%), Positives = 61/81 (75%), Gaps = 4/81 (4%)

Query: 67  IAECLIGDDTATVIF----TARNEQVELMKPGTTVIIRNAKIDMFKGSIRLAVDKWGRIE 122
           IAECL+GD+T T+IF    T  +  ++L+KPG T+ +RNAKI++F   +RLAVD  G I+
Sbjct: 456 IAECLVGDETGTIIFRGQQTGYDFLLDLVKPGATLSLRNAKINLFWEHMRLAVDWRGCIQ 515

Query: 123 VTEPANFVVKEDTNLSQVEYE 143
           +TEPA+F V+ED NLS+ +Y+
Sbjct: 516 LTEPASFEVREDNNLSEDKYD 536


>Medtr5g083900.1 | nucleic acid-binding, OB-fold-like protein,
           putative | LC | chr5:36203859-36205701 | 20130731
          Length = 229

 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 69/131 (52%), Gaps = 15/131 (11%)

Query: 18  PVFTKVDQLKPGTNGHTLVAKVLSSDTVLHKXXXXXXXXXXXQNIRPTVIAECLIGDDTA 77
           P+FTKV  L+P      +  KV++   V  K                  + E L+GD+T 
Sbjct: 111 PLFTKVQDLRPEMENINITLKVVNVKKVSSKGHMP--------------VTESLVGDETG 156

Query: 78  TVIFTARN-EQVELMKPGTTVIIRNAKIDMFKGSIRLAVDKWGRIEVTEPANFVVKEDTN 136
            +I  A   +++  +K G+T+++  AKI M++GS+RL V +   IE   PA F +KED N
Sbjct: 157 IIILRAVGADKINRVKEGSTIVLHKAKIIMYRGSMRLGVCRAEDIEEAPPAAFTIKEDCN 216

Query: 137 LSQVEYELVNV 147
           LS +EYE + V
Sbjct: 217 LSLIEYERIQV 227


>Medtr5g083870.1 | nucleic acid-binding, OB-fold-like protein | LC |
           chr5:36194915-36195298 | 20130731
          Length = 127

 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 73/135 (54%), Gaps = 19/135 (14%)

Query: 18  PVFTKVDQLKPGTNGHTLVAKVLSSDTVLHKXXXXXXXXXXXQNIRPTVIAECLIG---D 74
           PVF KV  L+P      L  KVL+   V  K                  + E L+G   D
Sbjct: 5   PVFIKVHDLRPEMEDVNLTLKVLNVKDVSRKGSMP--------------VTESLVGVEYD 50

Query: 75  DTATVIFTA-RNEQVELMKPGTTVIIRNAKIDMFKGSIRLAVDKWGRI-EVTEPANFVVK 132
           +T  +IF A   +++  +K G+T+++R A+I M+KGS+RL+V +   I E  EPA+F+VK
Sbjct: 51  ETGIIIFRAIGGDKINRVKEGSTIVVRKARILMYKGSMRLSVRRAEDIVEAPEPASFIVK 110

Query: 133 EDTNLSQVEYELVNV 147
           ED N S +E+E V V
Sbjct: 111 EDCNWSLIEFERVQV 125