Miyakogusa Predicted Gene

Lj6g3v2006970.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2006970.1 Non Characterized Hit- tr|I3T3J6|I3T3J6_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,63.04,3e-17,seg,NULL; coiled-coil,NULL,CUFF.60502.1
         (292 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g014400.1 | transmembrane protein, putative | HC | chr2:41...   140   2e-33
Medtr4g088385.1 | hypothetical protein | HC | chr4:34998967-3500...    92   8e-19
Medtr2g090660.1 | hypothetical protein | HC | chr2:38818689-3881...    51   1e-06

>Medtr2g014400.1 | transmembrane protein, putative | HC |
           chr2:4103894-4102642 | 20130731
          Length = 263

 Score =  140 bits (352), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 128/254 (50%), Positives = 145/254 (57%), Gaps = 40/254 (15%)

Query: 1   MAPFSNYISFLFFTALLLPLQIIARESQFFSKVTHFNNNNNVKEAELPNPNKDEQ-VTNK 59
           MA FSNYI FL  T LLLPLQ IARES+FFSKVTHFN    V       PNK+E  VTNK
Sbjct: 1   MATFSNYIFFLLLTTLLLPLQTIARESEFFSKVTHFNKETKV-------PNKEESPVTNK 53

Query: 60  PEQQPAFIPETENSYGLYGHDDESAQLPSPTTTTNQPLNTEFEDTSKYPNNKHSNYYNND 119
           PE+QP FIP+T+NSYGLYGHD  S  +PS   TT+   N+ FE+TS YPNN      NND
Sbjct: 54  PEEQPPFIPQTQNSYGLYGHD--SDHIPSTAATTST-TNSNFEETSNYPNNNKYY--NND 108

Query: 120 AYNTRLYNKDALGNDQNELTYTKEGRGGYNTPHIGNNQNELSYSEEGRGGYNSPRSHMGX 179
           AYNT+ YNKD  GN+QNEL+ TK    GYN+     N N+  Y                 
Sbjct: 109 AYNTKYYNKDTFGNNQNELSDTKYNEEGYNSMMEKQNNNQEYY----------------- 151

Query: 180 XXXXXXXXXXXXXXXXERHYYSXXXXXXXXXXXXXXXXXEKQGMSDTRFLEGGKYFYDMN 239
                           ER ++S                 EKQGMSDTRFLEGGKYFYD+N
Sbjct: 152 --------FNNNNAANERSFHSNNYNNYNAQNNRYNG--EKQGMSDTRFLEGGKYFYDVN 201

Query: 240 NEKYNPTHYDDSYR 253
            EKYNPT Y DS R
Sbjct: 202 YEKYNPTMYGDSSR 215


>Medtr4g088385.1 | hypothetical protein | HC |
          chr4:34998967-35000465 | 20130731
          Length = 358

 Score = 91.7 bits (226), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 58/92 (63%), Positives = 64/92 (69%), Gaps = 8/92 (8%)

Query: 1  MAPFSNYISFLFFTALLLPLQIIARESQFFSKVTHFNNNNNVKEAELPNPNKDEQVTNKP 60
          MAP S ++SFLF TAL   LQI AR+SQFFSKVTH NNNNNV+E        +E   NKP
Sbjct: 1  MAPISKFLSFLFLTALSFSLQIHARDSQFFSKVTHVNNNNNVREV-----PNNETPLNKP 55

Query: 61 EQQPAFIPETENSYGLYGHDDESAQLPSPTTT 92
          E QP F+PETENSYGLYGHD     L  PTTT
Sbjct: 56 ENQPVFVPETENSYGLYGHD---TGLHPPTTT 84



 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 30/36 (83%), Gaps = 1/36 (2%)

Query: 219 EKQGMSDTRFLEGGKYFYDMNN-EKYNPTHYDDSYR 253
           E+QGMSDTR +EGGKYFYD+N+ EKYNPT   DS +
Sbjct: 275 ERQGMSDTRVMEGGKYFYDVNSEEKYNPTFNGDSSK 310


>Medtr2g090660.1 | hypothetical protein | HC |
           chr2:38818689-38817390 | 20130731
          Length = 243

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 51/95 (53%), Gaps = 15/95 (15%)

Query: 21  QIIARESQFFSKVTHFNNNNNVKEAELPNPN------------KDEQVTNKPEQQPAFIP 68
           QI AR+++FFS  THF   +NV++ +LP               +   + + P  +P F+ 
Sbjct: 21  QIQARQNKFFSFFTHFKTTHNVEDPQLPQSPAPAPEPGAAPEIESTNIPSGPAPEPQFLV 80

Query: 69  ETENSYGLYGHDDESAQLPSPTTTTNQPLNTEFED 103
           ET N YGLYG D  S+Q  SPT  T +   T+FED
Sbjct: 81  ETGNGYGLYGID--SSQY-SPTKETPKTTLTDFED 112