Miyakogusa Predicted Gene

Lj6g3v2006420.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2006420.1 tr|A9SHW2|A9SHW2_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_79634
,50.52,6e-18,OPA3,Optic atrophy 3-like; SUBFAMILY NOT NAMED,NULL;
OPTIC ATROPHY 3 PROTEIN (OPA3),Optic atrophy 3-,CUFF.60463.1
         (169 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g014860.1 | optic atrophy 3 protein | HC | chr2:4320028-43...   244   3e-65
Medtr4g079210.1 | optic atrophy 3 protein | HC | chr4:30585212-3...   200   5e-52
Medtr4g079210.2 | optic atrophy 3 protein | HC | chr4:30585212-3...   151   3e-37

>Medtr2g014860.1 | optic atrophy 3 protein | HC |
           chr2:4320028-4324848 | 20130731
          Length = 169

 Score =  244 bits (623), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 120/154 (77%), Positives = 141/154 (91%), Gaps = 1/154 (0%)

Query: 17  SKPVASRLKQQAALHPRFRQLIINMAQANHQVSTKMQRRIYGHATDVEIRPLNEEKAVQA 76
           SKP+A +LKQQAA+HPRFRQLI+NMAQ+NHQ++TKMQRRIYGHATDVEIRPLNEEKAVQA
Sbjct: 16  SKPLAGKLKQQAAIHPRFRQLIVNMAQSNHQITTKMQRRIYGHATDVEIRPLNEEKAVQA 75

Query: 77  AVDLIGELFVFSVAGVLVVFEVQRSARSEARKEEIRKQELGAMKQKSEDLAQEVELLKHR 136
           AVDLIGELFVFSVA  +++FEVQRSARSEARKEEIRK+EL A++QK++ LA+EVELLK R
Sbjct: 76  AVDLIGELFVFSVAVAVLIFEVQRSARSEARKEEIRKRELEAVRQKNDGLAEEVELLKLR 135

Query: 137 LQEIEQMARGRGLAGVLNFRQ-GNTENAKTEKPA 169
           LQE+EQ+ARGRGL G+LNF+   + EN KTEK A
Sbjct: 136 LQELEQLARGRGLTGILNFKHIISKENEKTEKTA 169


>Medtr4g079210.1 | optic atrophy 3 protein | HC |
           chr4:30585212-30587507 | 20130731
          Length = 170

 Score =  200 bits (509), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 91/143 (63%), Positives = 123/143 (86%)

Query: 17  SKPVASRLKQQAALHPRFRQLIINMAQANHQVSTKMQRRIYGHATDVEIRPLNEEKAVQA 76
            KP+A+RLK++A  HP+FR  II++AQANH+ +T++QRRIYG ATDV IRPL+++KAVQA
Sbjct: 18  CKPIANRLKKEAGYHPKFRNFIISIAQANHRFTTRIQRRIYGKATDVLIRPLDQDKAVQA 77

Query: 77  AVDLIGELFVFSVAGVLVVFEVQRSARSEARKEEIRKQELGAMKQKSEDLAQEVELLKHR 136
           A DL+GELFVFSVAG  V++EVQR+ARSEARKEE+R+QE+ A+K +SE+L++E+ELL+ +
Sbjct: 78  AADLLGELFVFSVAGAAVIYEVQRNARSEARKEELRRQEIQAIKTRSEELSREIELLEQK 137

Query: 137 LQEIEQMARGRGLAGVLNFRQGN 159
           L E+E++ARGRGL G  NFR  N
Sbjct: 138 LHEMEKLARGRGLIGFFNFRLSN 160


>Medtr4g079210.2 | optic atrophy 3 protein | HC |
           chr4:30585212-30587173 | 20130731
          Length = 121

 Score =  151 bits (382), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 68/100 (68%), Positives = 89/100 (89%)

Query: 17  SKPVASRLKQQAALHPRFRQLIINMAQANHQVSTKMQRRIYGHATDVEIRPLNEEKAVQA 76
            KP+A+RLK++A  HP+FR  II++AQANH+ +T++QRRIYG ATDV IRPL+++KAVQA
Sbjct: 18  CKPIANRLKKEAGYHPKFRNFIISIAQANHRFTTRIQRRIYGKATDVLIRPLDQDKAVQA 77

Query: 77  AVDLIGELFVFSVAGVLVVFEVQRSARSEARKEEIRKQEL 116
           A DL+GELFVFSVAG  V++EVQR+ARSEARKEE+R+QE+
Sbjct: 78  AADLLGELFVFSVAGAAVIYEVQRNARSEARKEELRRQEI 117