Miyakogusa Predicted Gene

Lj6g3v1984420.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1984420.2 tr|B9GJ67|B9GJ67_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_753597 PE=4
SV=1,27.45,0.00000000001, ,CUFF.60387.2
         (278 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g016640.1 | hypothetical protein | HC | chr2:5138562-51330...   322   2e-88

>Medtr2g016640.1 | hypothetical protein | HC | chr2:5138562-5133087
           | 20130731
          Length = 608

 Score =  322 bits (825), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 188/284 (66%), Positives = 216/284 (76%), Gaps = 8/284 (2%)

Query: 1   MTQSSSKEECLTSKGKHGTVVDVDDFVKGNKNSKASRSMGGVFPAEGHSPTLPASSSKVN 60
           MTQSSS E   TSKGK  T+ DV  FVKG +N  ASRS   VFPA+G SPT P SSS+ N
Sbjct: 327 MTQSSSIEA--TSKGKLVTIGDVGGFVKGTENPSASRSANEVFPAKGRSPTSPTSSSQAN 384

Query: 61  IVTDLFKTFEGVSKSLIESQKPDIKIILRAMHVLSELLVH--VDGTESYDEHDPDVIMIP 118
           + TDL K FEG SKSLIES KP+IK+++ AMHVLSELL    VDG  SY EHD     I 
Sbjct: 385 VFTDLLKRFEGFSKSLIESPKPNIKVMVGAMHVLSELLAKTCVDGVGSYCEHDLSTTTIL 444

Query: 119 QIINNLNGFSTKKCGQRIST--LDSTPADSTFCPDRLLELPKELEMKSIEALVVPS--QL 174
           QIINNLN F+ K  G+RIST  LDSTPA+S FC DR +++ K LEM+++E L VP+  QL
Sbjct: 445 QIINNLNDFNAKVGGERISTSTLDSTPANSPFCLDRSVKVTKGLEMENLETLTVPNPNQL 504

Query: 175 YLQNDYTGKNTVSKVIGQSGQSSFASRSDEGTKKADEMAQLQVIRRSLGRSLDIDKQMHP 234
           YLQN  TGK  VS VIGQSG SSFAS S  GTK   +++QLQVIRRSLG++LD DKQMHP
Sbjct: 505 YLQNGNTGKTIVSNVIGQSGLSSFASSSGGGTKNGHDVSQLQVIRRSLGKNLDFDKQMHP 564

Query: 235 EALLFWNLWLDSEAERCYRKYKTYNCLMEAGVEVDCKNVAELWR 278
           E LLFWNLWLDSEAERCYRK+KTY+ LMEAGV+V+CKNVAELWR
Sbjct: 565 EDLLFWNLWLDSEAERCYRKFKTYHWLMEAGVDVNCKNVAELWR 608