Miyakogusa Predicted Gene

Lj6g3v1967050.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1967050.1 Non Characterized Hit- tr|I3T3P4|I3T3P4_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,69.57,0.000001,seg,NULL,gene.g67138.t1.1
         (114 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g022385.1 | thaliana 60S ribosomal protein L7 | HC | chr1:...    48   2e-06
Medtr2g038250.1 | thaliana 60S ribosomal protein L7 | HC | chr2:...    48   3e-06

>Medtr1g022385.1 | thaliana 60S ribosomal protein L7 | HC |
          chr1:7108698-7105236 | 20130731
          Length = 275

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/41 (68%), Positives = 33/41 (80%)

Query: 52 EEVKAFVPESVPEKQKWVEECALVKKYELQAAKKKRAESRK 92
          EEVK  VPESV +KQK  EE ALVKK E ++AKKKRA++RK
Sbjct: 35 EEVKTVVPESVLKKQKRNEEWALVKKQEQESAKKKRAQTRK 75


>Medtr2g038250.1 | thaliana 60S ribosomal protein L7 | HC |
          chr2:16653396-16650568 | 20130731
          Length = 244

 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/41 (68%), Positives = 33/41 (80%)

Query: 52 EEVKAFVPESVPEKQKWVEECALVKKYELQAAKKKRAESRK 92
          EEVK  VPESV +KQK  EE ALVKK E ++AKKKR+E+RK
Sbjct: 4  EEVKTVVPESVLKKQKRNEEWALVKKQEQESAKKKRSETRK 44