Miyakogusa Predicted Gene

Lj6g3v1966950.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1966950.1 tr|G7ILL5|G7ILL5_MEDTR 26S proteasome non-ATPase
regulatory subunit OS=Medicago truncatula GN=MTR_2g,99.03,0,26S
PROTEASOME NON-ATPASE REGULATORY SUBUNIT 14,NULL; EUKARYOTIC
TRANSLATION INITIATION FACTOR 3 -RE,CUFF.60417.1
         (309 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g017680.1 | 26S proteasome non-ATPase regulatory subunit-l...   585   e-167
Medtr1g019930.1 | 26S proteasome non-ATPase regulatory subunit-l...   575   e-164
Medtr3g108790.1 | COP9 signalosome complex subunit 5 | HC | chr3...   127   2e-29
Medtr8g006640.1 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | HC |...    62   8e-10
Medtr5g034240.1 | AMSH-like ubiquitin thioesterase | HC | chr5:1...    56   4e-08
Medtr8g104310.1 | AMSH-like ubiquitin thioesterase | HC | chr8:4...    54   3e-07
Medtr8g104310.2 | AMSH-like ubiquitin thioesterase | HC | chr8:4...    53   5e-07
Medtr7g021870.1 | eukaryotic translation initiation factor 3h | ...    52   5e-07

>Medtr2g017680.1 | 26S proteasome non-ATPase regulatory subunit-like
           protein | HC | chr2:5426885-5422810 | 20130731
          Length = 309

 Score =  585 bits (1508), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 284/309 (91%), Positives = 285/309 (92%)

Query: 1   MERLQRMFXXXXXXLGHPPPDSPTLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGE 60
           MERLQRMF      LGHPPPDSPTLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGE
Sbjct: 1   MERLQRMFAGAGGALGHPPPDSPTLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGE 60

Query: 61  FVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGC 120
           FVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGC
Sbjct: 61  FVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGC 120

Query: 121 WLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSN 180
           WLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSN
Sbjct: 121 WLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSN 180

Query: 181 LGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRFDTHSKT 240
           LGHLNKPSIQALIHGLNRHYYSIAINYR                WTDGLTL RFDTHSKT
Sbjct: 181 LGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLTLRRFDTHSKT 240

Query: 241 NEQTVQEMLSLAVKYNKAVQEEDELSPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTL 300
           NEQTVQEMLSLA KYNKAVQEEDEL+PEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTL
Sbjct: 241 NEQTVQEMLSLATKYNKAVQEEDELTPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTL 300

Query: 301 GMMLDTVVF 309
           GMMLDTVVF
Sbjct: 301 GMMLDTVVF 309


>Medtr1g019930.1 | 26S proteasome non-ATPase regulatory subunit-like
           protein | HC | chr1:6086387-6082221 | 20130731
          Length = 313

 Score =  575 bits (1482), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 284/310 (91%), Positives = 285/310 (91%), Gaps = 1/310 (0%)

Query: 1   MERLQRMFXXXXXXLG-HPPPDSPTLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLG 59
           MERLQRMF      LG HPPPDSPTLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLG
Sbjct: 4   MERLQRMFAGAGGALGGHPPPDSPTLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLG 63

Query: 60  EFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFG 119
           EFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFG
Sbjct: 64  EFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFG 123

Query: 120 CWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTS 179
           CWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTS
Sbjct: 124 CWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTS 183

Query: 180 NLGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRFDTHSK 239
           NLGHLNKPSIQALIHGLNRHYYSIAINYR                WTDGLTL RFD+HSK
Sbjct: 184 NLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLTLRRFDSHSK 243

Query: 240 TNEQTVQEMLSLAVKYNKAVQEEDELSPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQT 299
           TNEQTVQEMLSLA KYNKAVQEEDELSPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQT
Sbjct: 244 TNEQTVQEMLSLATKYNKAVQEEDELSPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQT 303

Query: 300 LGMMLDTVVF 309
           LGMMLDTVVF
Sbjct: 304 LGMMLDTVVF 313


>Medtr3g108790.1 | COP9 signalosome complex subunit 5 | HC |
           chr3:50262107-50265078 | 20130731
          Length = 357

 Score =  127 bits (318), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 80/184 (43%), Positives = 111/184 (60%), Gaps = 13/184 (7%)

Query: 29  EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVD 88
           ++V IS+LALLKM+ H R+G  +EVMGLM G+  D  ++ V+D FA+P  GT   V A  
Sbjct: 58  KRVKISALALLKMVVHARSGGTIEVMGLMQGK-TDADSIIVMDAFALPVEGTETRVNAQA 116

Query: 89  HVFQTNMLDML---KQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVV 145
             ++  M+D     KQ GR E VVGWYHSHPG+GCWLSG+D++TQ   +   +  +AVV+
Sbjct: 117 DAYEY-MVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVI 175

Query: 146 DPIQSVK-GKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQAL-IHGLNRHYYSI 203
           DP ++V  GKV I AFR   P+      +P      +  LNK  I+   +H   + YYS+
Sbjct: 176 DPTRTVSAGKVEIGAFRTY-PEGYKPADDPISEYQTIP-LNK--IEDFGVHC--KQYYSL 229

Query: 204 AINY 207
            I Y
Sbjct: 230 DITY 233


>Medtr8g006640.1 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | HC |
           chr8:774356-773324 | 20130731
          Length = 66

 Score = 61.6 bits (148), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 22/35 (62%), Positives = 28/35 (80%)

Query: 98  MLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQS 132
           M    GR E VVGWYHSHPG+GCWLSG+D++T ++
Sbjct: 29  MCNNAGRLENVVGWYHSHPGYGCWLSGIDVSTMKT 63


>Medtr5g034240.1 | AMSH-like ubiquitin thioesterase | HC |
           chr5:14819002-14814603 | 20130731
          Length = 235

 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 9/118 (7%)

Query: 51  MEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVG 110
           +E  G+ LG F+++ T+ +  +    Q     S  A +   +  +  +L +  R    VG
Sbjct: 83  LETCGI-LGAFLEKGTLYMTTLIIPKQESASNSCNATN---EEEVFTILNE--RSLYPVG 136

Query: 111 WYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTM 168
           W H+HP   C++S VD++TQ S++A+   A A+V+ P  + +       FRL  P  M
Sbjct: 137 WIHTHPSQSCFMSSVDLHTQYSYQAMIPEAFAIVLAPTDTSRS---CGLFRLTEPDGM 191


>Medtr8g104310.1 | AMSH-like ubiquitin thioesterase | HC |
           chr8:43936023-43927548 | 20130731
          Length = 511

 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 73/155 (47%), Gaps = 15/155 (9%)

Query: 26  DSSEQVYISSLALLKMLKHGRAGVP--MEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVS 83
           +S  Q++IS+  +   +K  ++     +E  G++ G   +     +  +    Q  T  S
Sbjct: 332 ESPLQLHISTAMMGSFMKLAKSNTDKNLETCGILAGSLKNR-KFYITALIIPKQEATSSS 390

Query: 84  VEAV--DHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAV 141
            +A   + +F+        Q  R    +GW H+HP   C++S +D++T  S++ +   AV
Sbjct: 391 CQATNEEEIFEA-------QDKRSLFPLGWIHTHPTQSCFMSSIDVHTHYSYQIMLPEAV 443

Query: 142 AVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQ 176
           A+V+ P  S +   +   FRL  P  M + ++ +Q
Sbjct: 444 AIVMAPTDSSRTHGI---FRLTTPGGMSVIRQCQQ 475


>Medtr8g104310.2 | AMSH-like ubiquitin thioesterase | HC |
           chr8:43935969-43927719 | 20130731
          Length = 373

 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 73/155 (47%), Gaps = 15/155 (9%)

Query: 26  DSSEQVYISSLALLKMLKHGRAGVP--MEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVS 83
           +S  Q++IS+  +   +K  ++     +E  G++ G   +     +  +    Q  T  S
Sbjct: 194 ESPLQLHISTAMMGSFMKLAKSNTDKNLETCGILAGSLKNR-KFYITALIIPKQEATSSS 252

Query: 84  VEAV--DHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAV 141
            +A   + +F+        Q  R    +GW H+HP   C++S +D++T  S++ +   AV
Sbjct: 253 CQATNEEEIFEA-------QDKRSLFPLGWIHTHPTQSCFMSSIDVHTHYSYQIMLPEAV 305

Query: 142 AVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQ 176
           A+V+ P  S +   +   FRL  P  M + ++ +Q
Sbjct: 306 AIVMAPTDSSRTHGI---FRLTTPGGMSVIRQCQQ 337


>Medtr7g021870.1 | eukaryotic translation initiation factor 3h | HC
           | chr7:6976764-6982516 | 20130731
          Length = 339

 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 2/132 (1%)

Query: 31  VYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHV 90
           V +  L +LK++KH +   P  V G +LG  V    + V + F  P       +EA    
Sbjct: 26  VQMEGLVILKIIKHCKDHSPSLVTGQLLGLDVGS-VLEVTNCFPFPMREEDEEIEADGAN 84

Query: 91  FQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQS 150
           +Q  M+  L++       VGWY S    G + +   I T  +++   +R V ++ DP ++
Sbjct: 85  YQLEMMRCLREVNVDNNTVGWYQS-TLLGSYQTVELIETFMNYQENIRRCVCIIYDPSRA 143

Query: 151 VKGKVVIDAFRL 162
            +G + + A +L
Sbjct: 144 DQGVLALKALKL 155