Miyakogusa Predicted Gene
- Lj6g3v1966780.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1966780.1 tr|Q533S1|Q533S1_LOTJA MADS box protein AGa
(Fragment) OS=Lotus japonicus PE=2 SV=1,97.67,0,K_BOX,Transcription
factor, K-box; coiled-coil,NULL; seg,NULL; K-box,Transcription factor,
K-box; MA,CUFF.60326.1
(129 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr2g017865.1 | MADS-box transcription factor | HC | chr2:5545... 145 1e-35
Medtr8g087860.1 | MADS-box transcription factor | HC | chr8:3635... 131 1e-31
Medtr3g452380.3 | MADS-box transcription factor | HC | chr3:1914... 82 2e-16
Medtr3g452380.2 | MADS-box transcription factor | HC | chr3:1914... 82 2e-16
Medtr3g452380.1 | MADS-box transcription factor | HC | chr3:1914... 82 2e-16
Medtr3g005530.1 | MADS-box transcription factor | HC | chr3:2504... 68 2e-12
Medtr3g005530.2 | MADS-box transcription factor | HC | chr3:2505... 68 2e-12
>Medtr2g017865.1 | MADS-box transcription factor | HC |
chr2:5545792-5553523 | 20130731
Length = 260
Score = 145 bits (365), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 83/134 (61%), Positives = 91/134 (67%), Gaps = 14/134 (10%)
Query: 1 MMGESLGSMNAXXXXXXXXXXXXGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAK 60
MMGESLGSMNA GISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAK
Sbjct: 126 MMGESLGSMNAKELKNLESKLEKGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAK 185
Query: 61 IAESERNHP-----NLSILAGSTSNYESMXXXXXXXXXXFDSRGYFQVTGLQPTTHTQYS 115
IAESERNH N+S+L G T NYE M ++SRGYFQV+GLQ ++
Sbjct: 186 IAESERNHSHHSNINMSMLPGGT-NYEPMQSQNQQQQ--YESRGYFQVSGLQSSS----- 237
Query: 116 RQDQISLQPSSQYA 129
+LQPSSQYA
Sbjct: 238 -SQMTALQPSSQYA 250
>Medtr8g087860.1 | MADS-box transcription factor | HC |
chr8:36350163-36354700 | 20130731
Length = 244
Score = 131 bits (330), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/124 (58%), Positives = 89/124 (71%), Gaps = 9/124 (7%)
Query: 1 MMGESLGSMNAXXXXXXXXXXXXGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAK 60
MMGESL +MN GISRIRSKKNE+LFAE+EYMQKRE++LHN+NQ+LRAK
Sbjct: 127 MMGESLSNMNGKDLRNLESKLEKGISRIRSKKNEMLFAELEYMQKREVELHNSNQVLRAK 186
Query: 61 IAESE-RNHPNLSILAGSTSNYESMXXXXXXXXXXFDSRGYFQVTGLQPTTHTQYSRQDQ 119
I+ESE R++ N+++L G TS +E M FDSRGYFQV LQP + QY+RQDQ
Sbjct: 187 ISESEQRSNHNVNVLPGGTS-FECM-----QPQQQFDSRGYFQVNELQP--NDQYARQDQ 238
Query: 120 ISLQ 123
+SLQ
Sbjct: 239 MSLQ 242
>Medtr3g452380.3 | MADS-box transcription factor | HC |
chr3:19142782-19134712 | 20130731
Length = 244
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 70/123 (56%), Gaps = 6/123 (4%)
Query: 1 MMGESLGSMNAXXXXXXXXXXXXGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAK 60
++GE+LGS++ G+SR+RS+K+E LFA++E+MQKREI+L N+N LRAK
Sbjct: 126 ILGEALGSLSLKELKNLEGRLEKGLSRVRSRKHETLFADVEFMQKREIELQNHNNYLRAK 185
Query: 61 IAESERNHPNLSILAGSTSNYESMXXXXXXXXXXFDSRGYFQVTGLQPTTHTQYSRQDQI 120
IAE ER L ++M +D R +F V L + QYSRQDQ
Sbjct: 186 IAEHERAQQQQHNLMPD----QTMCDQSLPSSQAYD-RNFFPVN-LLGSDQQQYSRQDQT 239
Query: 121 SLQ 123
+LQ
Sbjct: 240 ALQ 242
>Medtr3g452380.2 | MADS-box transcription factor | HC |
chr3:19142846-19134712 | 20130731
Length = 244
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 70/123 (56%), Gaps = 6/123 (4%)
Query: 1 MMGESLGSMNAXXXXXXXXXXXXGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAK 60
++GE+LGS++ G+SR+RS+K+E LFA++E+MQKREI+L N+N LRAK
Sbjct: 126 ILGEALGSLSLKELKNLEGRLEKGLSRVRSRKHETLFADVEFMQKREIELQNHNNYLRAK 185
Query: 61 IAESERNHPNLSILAGSTSNYESMXXXXXXXXXXFDSRGYFQVTGLQPTTHTQYSRQDQI 120
IAE ER L ++M +D R +F V L + QYSRQDQ
Sbjct: 186 IAEHERAQQQQHNLMPD----QTMCDQSLPSSQAYD-RNFFPVN-LLGSDQQQYSRQDQT 239
Query: 121 SLQ 123
+LQ
Sbjct: 240 ALQ 242
>Medtr3g452380.1 | MADS-box transcription factor | HC |
chr3:19142782-19134712 | 20130731
Length = 244
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 70/123 (56%), Gaps = 6/123 (4%)
Query: 1 MMGESLGSMNAXXXXXXXXXXXXGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAK 60
++GE+LGS++ G+SR+RS+K+E LFA++E+MQKREI+L N+N LRAK
Sbjct: 126 ILGEALGSLSLKELKNLEGRLEKGLSRVRSRKHETLFADVEFMQKREIELQNHNNYLRAK 185
Query: 61 IAESERNHPNLSILAGSTSNYESMXXXXXXXXXXFDSRGYFQVTGLQPTTHTQYSRQDQI 120
IAE ER L ++M +D R +F V L + QYSRQDQ
Sbjct: 186 IAEHERAQQQQHNLMPD----QTMCDQSLPSSQAYD-RNFFPVN-LLGSDQQQYSRQDQT 239
Query: 121 SLQ 123
+LQ
Sbjct: 240 ALQ 242
>Medtr3g005530.1 | MADS-box transcription factor | HC |
chr3:250434-244289 | 20130731
Length = 223
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 1 MMGESLGSMNAXXXXXXXXXXXXGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAK 60
+MG++L ++ GI+RIRSKK+E+L AEIEY QKREI+L N N LR K
Sbjct: 111 LMGDALSTLTVKELKQLENRLERGITRIRSKKHEMLLAEIEYFQKREIELENENLCLRTK 170
Query: 61 IAESERNHPNLSILAGSTSN 80
I + ER P +++++G N
Sbjct: 171 INDVER-LPQVNMVSGQELN 189
>Medtr3g005530.2 | MADS-box transcription factor | HC |
chr3:250595-244289 | 20130731
Length = 223
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 1 MMGESLGSMNAXXXXXXXXXXXXGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAK 60
+MG++L ++ GI+RIRSKK+E+L AEIEY QKREI+L N N LR K
Sbjct: 111 LMGDALSTLTVKELKQLENRLERGITRIRSKKHEMLLAEIEYFQKREIELENENLCLRTK 170
Query: 61 IAESERNHPNLSILAGSTSN 80
I + ER P +++++G N
Sbjct: 171 INDVER-LPQVNMVSGQELN 189