Miyakogusa Predicted Gene

Lj6g3v1966490.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1966490.1 tr|A9REZ7|A9REZ7_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_113082,30,0.00000000000009,seg,NULL,CUFF.60330.1
         (209 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g018105.1 | transmembrane protein, putative | HC | chr2:56...   238   3e-63

>Medtr2g018105.1 | transmembrane protein, putative | HC |
           chr2:5675163-5672419 | 20130731
          Length = 212

 Score =  238 bits (607), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 123/212 (58%), Positives = 148/212 (69%), Gaps = 3/212 (1%)

Query: 1   MSTVRSNSTXXXXXXXXXXXTPSQSLSFSSYLRYRNLFSLSHSLLTAVANLXXXXXXXXX 60
           M+TVRSN T           TPSQSLSFSSY R+RN  SLSHS+ T VANL         
Sbjct: 1   MTTVRSNPTLIIFFFLILFITPSQSLSFSSYYRFRNFLSLSHSIFTGVANLRTKRGDIAG 60

Query: 61  XXXXXXXXXXXXKMSGIGFLRFLWSAWSWSW--KDLSLTDLYGAVSDINELLRSLNEFTR 118
                       K++G GF++ +WSAWSW W  K+L LT++YGAVSD+NE LRSLNE TR
Sbjct: 61  AERAKTIANSLEKVNGFGFVKLVWSAWSWKWMLKELPLTEMYGAVSDVNEFLRSLNELTR 120

Query: 119 LESPAQTSAWLSRNYQKLLKVTKSLSRKLLNSFGQSKVVREIVETLQKEVVEGGLIRDCL 178
           LES  + + WLSRNYQ LL VTKSL  KLL +FGQS+ VR++VETL+ EVVEGGLIRDCL
Sbjct: 121 LESAGERAVWLSRNYQNLLTVTKSLFSKLLKAFGQSEGVRKVVETLRIEVVEGGLIRDCL 180

Query: 179 QVGTKDLKALVQVLKDLILQFSP-ATDKDPDL 209
            +G  DLK L++V KDL+LQF P ATDK+P+L
Sbjct: 181 LLGGNDLKDLIKVAKDLLLQFFPAATDKNPEL 212